Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.2e-55 218.8 113 100.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 1.6e-53 212.6 118 95.8
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.6e-53 212.6 118 95.8
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 3.5e-53 211.5 113 96.5
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 4.5e-53 211.1 113 96.5
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 5.9e-53 210.7 113 96.5
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-52 209.5 126 89.7
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.7e-52 209.1 113 94.7
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.7e-52 209.1 113 95.6
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 3.8e-52 208.0 113 94.7
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 5.0e-52 207.6 113 94.7
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.2e-51 204.9 113 92.9
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 4.7e-50 201.1 119 89.9
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 8.0e-50 200.3 125 86.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 4.8e-47 191.0 119 85.7
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 5.3e-46 187.6 113 85.8
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.0e-45 185.7 111 86.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.9e-45 184.1 113 83.2
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.0e-44 183.3 111 86.5
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.0e-44 183.3 111 84.7
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.7e-44 182.6 111 83.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.7e-44 182.6 113 81.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.7e-44 182.6 111 84.7
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.2e-44 182.2 111 83.8
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.8e-44 181.4 113 82.3
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.5e-44 180.6 111 80.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 3.2e-43 178.3 113 78.8
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 4.2e-43 177.9 113 81.4
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 7.2e-43 177.2 111 79.3
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 7.2e-43 177.2 111 81.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 7.2e-43 177.2 111 81.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 7.2e-43 177.2 111 81.1
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 9.4e-43 176.8 113 81.4
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 9.4e-43 176.8 111 80.2
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.2e-42 176.4 113 79.6
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.2e-42 176.4 111 78.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.6e-42 176.0 113 78.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 3.6e-42 174.9 114 78.9
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.6e-42 174.9 111 81.1
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.0e-42 173.7 118 78.0
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.8e-41 172.6 113 77.9
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.3e-41 172.2 113 85.0
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 3.0e-41 171.8 111 77.5
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 4.0e-41 171.4 113 75.2
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 5.2e-41 171.0 111 76.6
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 6.8e-41 170.6 113 77.0
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 8.8e-41 170.2 111 78.4
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 8.8e-41 170.2 113 78.8
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.2e-40 169.9 113 78.8
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.5e-40 169.5 111 78.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.6e-40 168.7 113 76.1
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 5.7e-40 167.5 113 77.0
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 7.5e-40 167.2 113 77.0
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.3e-39 166.4 113 77.0
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.2e-39 165.6 113 77.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 2.8e-39 165.2 113 72.6
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 2.8e-39 165.2 135 66.7
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 2.8e-39 165.2 135 66.7
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.7e-39 164.9 126 70.6
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.7e-39 164.9 126 70.6
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 3.7e-39 164.9 113 76.1
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 6.3e-39 164.1 111 73.9
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 8.3e-39 163.7 111 75.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.4e-38 162.9 112 77.7
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.8e-38 162.5 113 75.2
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 2.4e-38 162.2 112 79.5
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 2.4e-38 162.2 111 72.1
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.1e-38 161.8 111 72.1
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-38 161.8 112 79.5
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 3.1e-38 161.8 100 85.0
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 3.1e-38 161.8 113 77.0
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 4.1e-38 161.4 113 75.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 5.4e-38 161.0 123 71.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 9.1e-38 160.2 111 74.8
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 9.1e-38 160.2 117 72.6
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.6e-37 159.5 111 77.5
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 3.5e-37 158.3 124 67.7
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 3.5e-37 158.3 113 74.3
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.0e-36 156.8 111 73.0
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.3e-36 156.4 110 73.6
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.7e-36 156.0 113 72.6
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 8.5e-36 153.7 113 74.3
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 8.5e-36 153.7 111 71.2
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.9e-35 152.5 111 70.3
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.2e-35 151.8 147 57.8
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 4.2e-35 151.4 113 69.0
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.2e-35 151.4 111 69.4
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 7.2e-35 150.6 111 67.6
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.1e-34 149.1 107 69.2
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.6e-34 148.3 110 69.1
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 5.2e-33 144.4 113 65.5
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 8.8e-33 143.7 113 63.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.2e-32 143.3 112 66.1
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.5e-32 142.9 111 71.2
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.0e-32 142.5 90 77.8
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 2.0e-32 142.5 113 73.5
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.4e-32 141.7 113 66.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.3e-31 139.8 168 50.0
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.3e-31 139.8 111 70.3
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.3e-31 139.8 92 72.8
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.7e-31 139.4 133 59.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.9e-31 137.9 88 75.0
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 6.3e-31 137.5 127 62.2
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.1e-30 136.7 107 67.3
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.8e-30 136.0 109 66.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.0e-30 134.0 104 71.2
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 7.8e-29 130.6 84 76.2
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 5.0e-28 127.9 110 66.4
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 8.6e-28 127.1 125 53.6
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.1e-27 126.7 111 63.1
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.9e-27 125.9 113 61.9
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.9e-27 125.9 101 63.4
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.3e-27 124.8 111 62.2
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.6e-27 124.4 84 73.8
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 5.6e-27 124.4 95 62.1
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.8e-25 119.4 105 55.2
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 2.3e-25 119.0 83 75.9
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.3e-25 119.0 113 54.0
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.5e-24 116.3 115 59.1
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.0e-24 115.9 70 78.6
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.4e-24 115.2 69 79.7
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.2e-23 112.5 70 75.7
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.2e-21 106.7 88 65.9
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.7e-20 102.8 168 41.1
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 6.2e-18 94.4 83 67.5
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 4.0e-17 91.7 49 91.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 8.9e-17 90.5 60 70.0
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.7e-12 76.3 66 50.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 4.7e-10 68.2 48 66.7


User provided reference genes

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