Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35134 Brassica carinata HOM05D019723 ORTHO05D020024 1.6e-130 469.5 250 100.0
BolC8t47473H Brassica oleracea HOM05D000290 ORTHO05D007356 7.4e-32 141.7 101 75.2
BolC5t30021H Brassica oleracea HOM05D000290 ORTHO05D007356 2.2e-31 140.2 101 74.3
BcaB01g05718 Brassica carinata HOM05D000290 ORTHO05D007356 2.8e-31 139.8 205 45.4
A03p02240 Brassica napus HOM05D000290 ORTHO05D007356 3.7e-31 139.4 205 45.4
BraA03t09588Z Brassica rapa HOM05D000290 ORTHO05D007356 3.7e-31 139.4 205 45.4
BcaB01g05943 Brassica carinata HOM05D000290 ORTHO05D007356 1.8e-30 137.1 205 44.4
C03p02580 Brassica napus HOM05D000290 ORTHO05D007356 1.8e-30 137.1 205 44.9
BolC3t12810H Brassica oleracea HOM05D000290 ORTHO05D007356 5.3e-30 135.6 205 43.9
Sp6g37630 Schrenkiella parvula HOM05D000290 ORTHO05D007356 3.8e-28 129.4 208 43.8
C08p06270 Brassica napus HOM05D000290 ORTHO05D007356 1.5e-27 127.5 70 88.6
Thhalv10013198m.g Eutrema salsugineum HOM05D000290 ORTHO05D007356 1.2e-26 124.4 208 41.8
CARHR208040 Cardamine hirsuta HOM05D000290 ORTHO05D007356 2.7e-26 123.2 208 40.9
A07p10010 Brassica napus HOM05D000290 ORTHO05D020024 5.2e-25 119.0 96 70.8
C09p71500 Brassica napus HOM05D000290 ORTHO05D007356 2.0e-24 117.1 207 40.6
BolC9t59913H Brassica oleracea HOM05D000290 ORTHO05D007356 5.7e-24 115.5 207 40.6
BcaC06g32229 Brassica carinata HOM05D000290 ORTHO05D007356 2.2e-23 113.6 207 40.1
AT5G05200 Arabidopsis thaliana HOM05D000290 ORTHO05D007356 3.7e-23 112.8 208 38.5
Carub.0006s0413 Capsella rubella HOM05D000290 ORTHO05D007356 8.2e-23 111.7 208 38.9
A10p30990 Brassica napus HOM05D000290 ORTHO05D007356 1.1e-22 111.3 207 40.6
BraA10t45144Z Brassica rapa HOM05D000290 ORTHO05D007356 1.1e-22 111.3 207 40.6
Aa31LG11G6040 Aethionema arabicum HOM05D000290 ORTHO05D007356 1.4e-22 110.9 210 38.6
C09p59170 Brassica napus HOM05D019723 ORTHO05D020024 4.1e-22 109.4 160 49.4
AL6G15040 Arabidopsis lyrata HOM05D000290 ORTHO05D007356 1.6e-21 107.5 208 37.5
THA.LOC104823168 Tarenaya hassleriana HOM05D000290 ORTHO05D007356 4.2e-19 99.4 101 53.5
vmacro06903 Vaccinium macrocarpon HOM05D000290 ORTHO05D007356 4.2e-19 99.4 101 53.5
QL08p065093 Quercus lobata HOM05D000290 ORTHO05D007356 1.6e-18 97.4 101 53.5
Dinv34498 Davidia involucrata HOM05D000290 ORTHO05D007356 2.7e-18 96.7 101 53.5
COL.COLO4_19476 Corchorus olitorius HOM05D000290 ORTHO05D007356 3.6e-18 96.3 101 51.5
GSVIVG01032656001 Vitis vinifera HOM05D000290 ORTHO05D007356 3.6e-18 96.3 101 50.5
Eucgr.G03148 Eucalyptus grandis HOM05D000290 ORTHO05D007356 4.7e-18 95.9 101 52.5
TPR.G33928 Trifolium pratense HOM05D000290 ORTHO05D007356 8.0e-18 95.1 101 51.5
arahy.Tifrunner.gnm1.ann1.FMIL5U Arachis hypogaea HOM05D000290 ORTHO05D007356 1.0e-17 94.7 97 52.6
arahy.Tifrunner.gnm1.ann1.S15XUX Arachis hypogaea HOM05D000290 ORTHO05D007356 1.0e-17 94.7 97 52.6
MELO3C020171.2 Cucumis melo HOM05D000290 ORTHO05D007356 1.4e-17 94.4 101 48.5
Phvul.008G186400 Phaseolus vulgaris HOM05D000290 ORTHO05D007356 1.4e-17 94.4 101 49.5
Rhsim03G0153700 Rhododendron simsii HOM05D000290 ORTHO05D007356 1.8e-17 94.0 101 51.5
Lalb_Chr10g0102831 Lupinus albus HOM05D000290 ORTHO05D007356 2.3e-17 93.6 101 50.5
Potri.019G061300 Populus trichocarpa HOM05D000290 ORTHO05D007356 2.3e-17 93.6 101 51.5
CiPaw.01G307500 Carya illinoinensis HOM05D000290 ORTHO05D007356 3.0e-17 93.2 101 51.5
CsaV3_5G011120 Cucumis sativus L. HOM05D000290 ORTHO05D007356 3.0e-17 93.2 101 48.5
Glyma.14G186700 Glycine max HOM05D000290 ORTHO05D007356 3.0e-17 93.2 95 50.5
Medtr5g068050 Medicago truncatula HOM05D000290 ORTHO05D007356 3.0e-17 93.2 101 51.5
Sed0001960 Sechium edule HOM05D000290 ORTHO05D007356 3.0e-17 93.2 101 48.5
Psat2g061840 Pisum sativum HOM05D000290 ORTHO05D007356 4.0e-17 92.8 101 50.5
Cfa001193 Carpinus fangiana HOM05D000290 ORTHO05D007356 5.2e-17 92.4 101 51.5
Haze_17371 Corylus avellana HOM05D000290 ORTHO05D007356 5.2e-17 92.4 101 51.5
Duzib114G0405 Durio zibethinus HOM05D000290 ORTHO05D007356 5.2e-17 92.4 101 47.5
Hma1.2p1_1805F.1_g303140 Hydrangea macrophylla HOM05D000290 ORTHO05D007356 5.2e-17 92.4 101 49.5
Nitab4.5_0000171g0290 Nicotiana tabacum HOM05D000290 ORTHO05D007356 6.8e-17 92.0 100 51.0
CANSAT56G2455 Cannabis sativa HOM05D000290 ORTHO05D007356 8.8e-17 91.7 101 50.5
Gohir.A05G404300 Gossypium hirsutum HOM05D000290 ORTHO05D007356 8.8e-17 91.7 101 47.5
Gohir.D04G011400 Gossypium hirsutum HOM05D000290 ORTHO05D007356 8.8e-17 91.7 101 47.5
Gorai.012G013600 Gossypium raimondii HOM05D000290 ORTHO05D007356 8.8e-17 91.7 101 47.5
Sc10g0003060 Simmondsia chinensis HOM05D000290 ORTHO05D007356 1.2e-16 91.3 100 50.0
CSS0037983 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007356 1.5e-16 90.9 70 61.4
CSS0016279 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007356 2.0e-16 90.5 70 61.4
Migut.F01231 Erythranthe guttata HOM05D000290 ORTHO05D007356 2.0e-16 90.5 70 62.9
TWI09G1541 Tripterygium wilfordii HOM05D000290 ORTHO05D007356 2.0e-16 90.5 103 49.5
Cpa.g.sc19.40 Carica papaya HOM05D000290 ORTHO05D007356 2.6e-16 90.1 70 62.9
AUR62030591 Chenopodium quinoa HOM05D000290 ORTHO05D007356 2.6e-16 90.1 100 49.0
Manes.07G142100 Manihot esculenta HOM05D000290 ORTHO05D007356 2.6e-16 90.1 101 48.5
EL10Ac2g02669 Beta vulgaris HOM05D000290 ORTHO05D007356 3.4e-16 89.7 100 48.0
AUR62024948 Chenopodium quinoa HOM05D000290 ORTHO05D007356 3.4e-16 89.7 100 49.0
ClCG07G005270 Citrullus lanatus HOM05D000290 ORTHO05D007356 3.4e-16 89.7 101 47.5
Duzib128G1704 Durio zibethinus HOM05D000290 ORTHO05D007356 3.4e-16 89.7 101 46.5
Nitab4.5_0005979g0040 Nicotiana tabacum HOM05D000290 ORTHO05D007356 3.4e-16 89.7 70 61.4
Peaxi162Scf00073g02224 Petunia axillaris HOM05D000290 ORTHO05D007356 3.4e-16 89.7 97 49.5
Thecc.10G185100 Theobroma cacao HOM05D000290 ORTHO05D007356 3.4e-16 89.7 101 46.5
LjContig00408g0018075 Lotus japonicus HOM05D000290 ORTHO05D007356 4.4e-16 89.4 101 50.5
MD07G1235400 Malus domestica HOM05D000290 ORTHO05D007356 4.4e-16 89.4 101 48.5
PGR142G4431 Punica granatum HOM05D000290 ORTHO05D007356 4.4e-16 89.4 101 48.5
Ah.12g064460 Amaranthus hybridus HOM05D000290 ORTHO05D007356 7.5e-16 88.6 100 49.0
TAR623G1031 Trochodendron aralioides HOM05D000290 ORTHO05D007356 7.5e-16 88.6 70 61.4
BcaC06g34088 Brassica carinata HOM05D000290 ORTHO05D027172 9.8e-16 88.2 123 48.8
Ca_23242_v3 Cicer arietinum L. HOM05D000290 ORTHO05D007356 9.8e-16 88.2 101 49.5
Lj8A52T21 Lonicera japonica HOM05D000290 ORTHO05D007356 9.8e-16 88.2 70 60.0
Solyc03g095620.4 Solanum lycopersicum HOM05D000290 ORTHO05D007356 9.8e-16 88.2 97 48.5
Sopen03g025570 Solanum pennellii HOM05D000290 ORTHO05D007356 9.8e-16 88.2 97 48.5
Oeu039386.1 Olea europaea HOM05D000290 ORTHO05D007356 1.3e-15 87.8 70 60.0
CAN.G1229.6 Capsicum annuum HOM05D000290 ORTHO05D007356 2.2e-15 87.0 70 58.6
PGSC0003DMG400022947 Solanum tuberosum HOM05D000290 ORTHO05D007356 2.2e-15 87.0 97 47.4
Actinidia01008 Actinidia chinensis HOM05D000290 ORTHO05D007356 2.8e-15 86.7 101 48.5
Sabra19G0075100 Salix brachista HOM05D000290 ORTHO05D007356 3.7e-15 86.3 101 47.5
ECA238G2935 Erigeron canadensis HOM05D000290 ORTHO05D007356 8.3e-15 85.1 70 58.6
Os07g0227800 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D007356 1.1e-14 84.7 101 44.6
Atru.chr12.193 Acer truncatum HOM05D000290 ORTHO05D007356 1.4e-14 84.3 70 58.6
Ciclev10031187m.g Citrus clementina HOM05D000290 ORTHO05D007356 1.8e-14 84.0 206 32.0
SGA_v2.0_scaffold160G37737 Striga asiatica HOM05D000290 ORTHO05D007356 1.8e-14 84.0 97 48.5
Pp3c1_33470 Physcomitrium patens HOM05D000290 ORTHO05D007356 2.4e-14 83.6 70 54.3
Prupe.2G265700 Prunus persica HOM05D000290 ORTHO05D007356 3.1e-14 83.2 101 46.5
MD01G1169500 Malus domestica HOM05D000290 ORTHO05D007356 5.4e-14 82.4 101 45.5
Hund13437 Selenicereus undatus HOM05D000290 ORTHO05D007356 5.4e-14 82.4 66 60.6
Aqoxy4G03280 Aquilegia oxysepala HOM05D000290 ORTHO05D007356 7.0e-14 82.0 169 39.1
Lsat_1_v5_gn_2_126721 Lactuca sativa HOM05D000290 ORTHO05D007356 7.0e-14 82.0 70 57.1
HanXRQChr14g0460511 Helianthus annuus HOM05D000290 ORTHO05D007356 9.1e-14 81.6 70 57.1
RcHm_v2.0_Chr1g0372581 Rosa chinensis HOM05D000290 ORTHO05D007356 9.1e-14 81.6 103 43.7
Zm00001eb303700 Zea mays HOM05D000290 ORTHO05D007356 9.1e-14 81.6 101 43.6
FAN10G3915 Fragaria x ananassa HOM05D000290 ORTHO05D007356 1.2e-13 81.3 101 43.6
ATR1127G020 Amborella trichopoda HOM05D000290 ORTHO05D007356 1.6e-13 80.9 70 54.3
EL10Ac3g06530 Beta vulgaris HOM05D000290 ORTHO05D007356 1.6e-13 80.9 64 57.8
Cc02_g05200 Coffea canephora HOM05D000290 ORTHO05D007356 1.6e-13 80.9 70 52.9
FAN01G0461 Fragaria x ananassa HOM05D000290 ORTHO05D007356 1.6e-13 80.9 101 42.6
PSO017G3158 Papaver somniferum HOM05D000290 ORTHO05D007356 1.6e-13 80.9 70 54.3
FvH4_7g26150 Fragaria vesca HOM05D000290 ORTHO05D007356 2.0e-13 80.5 101 43.6
FAN06G0462 Fragaria x ananassa HOM05D000290 ORTHO05D007356 2.0e-13 80.5 101 43.6
PSO170G6016 Papaver somniferum HOM05D000290 ORTHO05D007356 2.0e-13 80.5 127 39.4
SalBow2G1855 Salvia bowleyana HOM05D000290 ORTHO05D007356 3.5e-13 79.7 62 58.1
HPP92_017912 Vanilla planifolia HOM05D000290 ORTHO05D007356 1.3e-12 77.8 70 50.0
SEGI_22277 Sequoiadendron giganteum HOM05D000290 ORTHO05D007356 1.7e-12 77.4 70 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3768 Anthoceros agrestis HOM05D000290 ORTHO05D007356 2.3e-12 77.0 95 44.2
EL10Ac3g06672 Beta vulgaris HOM05D000290 ORTHO05D007356 5.0e-12 75.9 59 61.0
unitig_90.g27551 Utricularia gibba HOM05D000290 ORTHO05D007356 5.0e-12 75.9 70 51.4
CBR_g39924 Chara braunii HOM05D000290 ORTHO05D007356 1.9e-11 73.9 95 41.1
Actinidia07789 Actinidia chinensis HOM05D000290 ORTHO05D007356 3.2e-11 73.2 99 42.4
Mapoly0021s0153 Marchantia polymorpha HOM05D000290 ORTHO05D007356 4.2e-11 72.8 70 47.1
BraA01t01467Z Brassica rapa HOM05D019723 ORTHO05D020024 2.8e-10 70.1 40 92.5
SMO361G0050 Selaginella moellendorffii HOM05D000290 ORTHO05D007356 2.8e-10 70.1 70 48.6
A08p10230 Brassica napus HOM05D000290 ORTHO05D007356 3.0e-09 66.6 54 59.3
SEGI_34302 Sequoiadendron giganteum HOM05D003392 ORTHO05D003801 2.0e-08 63.9 62 45.2
Cre09.g407801 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D007356 3.4e-08 63.2 70 40.0
C08p06280 Brassica napus HOM05D019723 ORTHO05D020024 5.7e-08 62.4 43 83.7
BolC5t30022H Brassica oleracea HOM05D019723 ORTHO05D020024 5.7e-08 62.4 43 83.7
BolC8t47474H Brassica oleracea HOM05D019723 ORTHO05D020024 5.7e-08 62.4 43 83.7
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.1e-06 58.2 93 34.4
Os05g0323800 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006513 2.4e-06 57.0 95 34.7
TWI73G1110 Tripterygium wilfordii HOM05D000290 ORTHO05D006513 7.0e-06 55.5 71 38.0


User provided reference genes

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