Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.5e-81 306.2 159 100.0
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 8.2e-77 290.4 157 96.2
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 5.3e-76 287.7 157 94.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.2e-75 286.6 151 98.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.9e-75 284.3 150 98.7
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.9e-74 282.0 151 97.4
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.9e-74 282.0 151 97.4
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 1.1e-68 263.5 154 89.6
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 7.0e-68 260.8 153 88.9
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 7.2e-65 250.8 153 85.0
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 7.2e-65 250.8 153 86.9
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 2.7e-64 248.8 153 86.9
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 4.7e-64 248.1 153 86.3
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 7.7e-59 230.7 153 79.7
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 5.6e-41 171.4 145 62.1
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 7.3e-41 171.0 145 62.1
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 1.2e-40 170.2 141 62.4
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 1.2e-40 170.2 145 60.0
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.2e-40 170.2 143 61.5
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 2.1e-40 169.5 143 60.8
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 2.8e-40 169.1 145 61.4
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 2.8e-40 169.1 141 62.4
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 3.6e-40 168.7 153 57.5
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 4.7e-40 168.3 145 61.4
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 8.1e-40 167.5 141 61.7
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 8.1e-40 167.5 143 60.8
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.1e-39 167.2 143 60.8
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.4e-39 166.8 143 60.1
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 1.8e-39 166.4 141 60.3
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 2.3e-39 166.0 145 59.3
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 2.3e-39 166.0 143 60.1
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 2.3e-39 166.0 141 59.6
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 3.1e-39 165.6 139 59.7
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 3.1e-39 165.6 145 58.6
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 4.0e-39 165.2 142 57.7
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 5.2e-39 164.9 143 60.1
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 6.8e-39 164.5 143 59.4
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 8.9e-39 164.1 143 59.4
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 8.9e-39 164.1 143 58.7
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 1.2e-38 163.7 141 60.3
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.5e-38 163.3 143 58.7
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 2.0e-38 162.9 143 58.0
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 2.0e-38 162.9 142 57.7
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 3.4e-38 162.2 143 58.7
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 7.5e-38 161.0 143 58.7
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 9.8e-38 160.6 144 56.9
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.3e-37 160.2 143 58.7
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 2.2e-37 159.5 143 58.0
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 2.2e-37 159.5 143 58.0
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 2.9e-37 159.1 141 58.2
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 2.9e-37 159.1 145 57.9
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 2.9e-37 159.1 136 58.8
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 3.7e-37 158.7 143 56.6
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 3.7e-37 158.7 141 56.0
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 4.9e-37 158.3 143 56.6
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 4.9e-37 158.3 153 56.2
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 8.3e-37 157.5 143 57.3
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 1.1e-36 157.1 142 56.3
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 1.1e-36 157.1 139 56.8
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.9e-36 156.4 143 55.9
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 3.2e-36 155.6 129 62.0
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 3.2e-36 155.6 143 54.5
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 3.2e-36 155.6 143 55.9
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 7.1e-36 154.5 142 54.9
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.2e-35 153.7 142 54.9
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 1.6e-35 153.3 144 56.2
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.6e-35 153.3 144 53.5
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 1.6e-35 153.3 143 54.5
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 1.6e-35 153.3 143 56.6
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 2.1e-35 152.9 143 55.2
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 3.5e-35 152.1 129 59.7
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 3.5e-35 152.1 129 62.0
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 3.5e-35 152.1 151 53.0
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 4.6e-35 151.8 143 55.9
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 6.0e-35 151.4 138 58.0
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.3e-34 150.2 143 56.6
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 3.0e-34 149.1 143 53.8
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 3.9e-34 148.7 143 53.1
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 6.6e-34 147.9 148 52.7
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 6.6e-34 147.9 129 58.1
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 8.6e-34 147.5 153 51.6
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.5e-33 146.7 150 54.0
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.3e-33 145.2 142 52.1
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.3e-33 145.2 142 52.1
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 1.2e-32 143.7 143 55.2
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 2.8e-32 142.5 143 55.2
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 2.8e-32 142.5 152 52.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.7e-32 141.7 101 75.2
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 1.1e-31 140.6 143 53.1
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 2.3e-31 139.4 143 52.4
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 5.2e-31 138.3 111 61.3
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 6.8e-31 137.9 107 65.4
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 2.6e-30 136.0 139 54.0
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 3.4e-30 135.6 155 51.0
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 7.6e-30 134.4 109 61.5
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 7.6e-30 134.4 140 52.9
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 9.9e-30 134.0 135 49.6
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.7e-29 132.1 125 59.2
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-28 130.6 75 92.0
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 3.2e-28 129.0 131 49.6
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 5.4e-28 128.3 190 42.6
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 2.1e-27 126.3 135 51.9
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 5.1e-26 121.7 139 46.8
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 6.6e-26 121.3 102 60.8
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 1.5e-25 120.2 150 46.7
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 5.6e-25 118.2 142 46.5
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 7.3e-25 117.9 148 43.2
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 1.1e-23 114.0 139 45.3
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 2.0e-22 109.8 107 57.0
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 9.9e-22 107.5 110 54.5
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 2.9e-21 105.9 81 66.7
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 3.8e-21 105.5 135 45.2
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 4.2e-20 102.1 65 75.4
C05p24340 Brassica napus HOM05D052559 ORTHO05D040828 5.4e-20 101.7 198 40.4
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 5.8e-14 81.6 71 57.7
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 8.4e-13 77.8 147 40.1
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 3.2e-12 75.9 68 55.9
BcaC02g08720 Brassica carinata HOM05D028134 ORTHO05D014959 1.3e-10 70.5 44 81.8
BcaC07g40802 Brassica carinata HOM05D000076 ORTHO05D014959 3.9e-10 68.9 42 83.3
BolC5t31167H Brassica oleracea HOM05D052559 ORTHO05D040828 3.3e-09 65.9 99 49.5
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 4.5e-06 55.5 57 50.9
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 9.9e-06 54.3 34 73.5
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 9.9e-06 54.3 34 73.5


User provided reference genes

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