Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.7e-76 287.7 140 100.0
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 6.4e-73 277.3 140 96.4
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 6.4e-73 277.3 140 96.4
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 3.2e-72 275.0 142 95.8
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.5e-71 271.6 142 94.4
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.1e-64 250.0 140 87.9
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.3e-62 243.0 140 83.6
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.7e-62 242.7 140 83.6
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.9e-62 241.5 140 82.9
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 5.0e-62 241.1 140 82.9
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 5.0e-62 241.1 139 84.9
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.5e-61 239.6 140 84.3
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.6e-60 236.1 136 85.3
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.6e-60 236.1 140 81.4
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.8e-59 230.7 140 82.1
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.6e-58 228.8 136 83.8
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 5.8e-58 227.6 136 83.8
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.2e-52 207.6 114 89.5
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.4e-48 195.7 140 70.0
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.5e-47 191.8 139 67.6
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.7e-46 189.5 139 68.3
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.0e-46 188.7 140 67.9
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 5.8e-42 174.5 140 61.4
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 2.9e-41 172.2 139 61.2
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 8.4e-41 170.6 140 60.7
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 4.2e-40 168.3 131 65.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 5.4e-40 167.9 139 59.7
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.7e-39 165.6 140 59.3
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.3e-38 163.3 140 57.9
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.3e-38 162.5 139 59.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.0e-38 162.2 133 60.9
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 3.9e-38 161.8 142 59.2
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.9e-37 159.5 142 59.9
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.3e-37 158.7 137 57.7
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 5.6e-37 157.9 116 63.8
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 3.6e-36 155.2 138 57.2
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.4e-35 153.3 118 61.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.8e-35 152.9 118 59.3
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.1e-35 152.1 126 58.7
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 9.0e-35 150.6 133 56.4
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.0e-34 149.4 138 55.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.0e-34 149.4 138 55.8
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.0e-34 149.4 137 54.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.0e-34 149.4 137 54.0
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 2.6e-34 149.1 118 62.7
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.6e-34 149.1 118 60.2
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.4e-34 148.7 134 56.7
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.5e-34 148.3 136 58.8
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.9e-33 145.6 137 53.3
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 2.9e-33 145.6 118 59.3
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 4.9e-33 144.8 154 53.9
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.4e-33 144.4 137 52.6
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 8.4e-33 144.1 140 57.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.9e-32 142.9 136 58.1
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.2e-31 140.2 139 53.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.1e-31 139.4 124 58.9
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.7e-31 139.0 141 53.9
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.6e-31 138.3 142 54.9
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.9e-31 137.5 140 55.0
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 7.9e-31 137.5 139 56.1
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 140 54.3
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.8e-30 136.3 141 53.2
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.8e-30 136.3 139 53.2
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.8e-30 136.3 125 56.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.8e-30 136.3 120 58.3
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.8e-30 136.3 140 53.6
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.1e-29 133.7 132 55.3
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.1e-29 133.7 118 58.5
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.9e-29 132.9 131 54.2
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.9e-29 132.9 139 46.8
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.9e-29 132.9 142 50.7
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.9e-29 132.9 139 51.1
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 2.5e-29 132.5 96 66.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.5e-29 132.5 138 53.6
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 7.4e-29 131.0 115 54.8
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-28 130.2 124 54.8
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.3e-28 130.2 121 54.5
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 1.6e-28 129.8 144 50.0
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.1e-27 127.1 137 48.9
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.4e-27 126.7 117 53.8
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.4e-27 126.7 110 61.8
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.4e-27 126.7 122 58.2
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.0e-27 125.2 133 45.1
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 4.0e-27 125.2 121 53.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 9.0e-27 124.0 124 52.4
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.5e-26 123.2 141 50.4
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.5e-26 123.2 129 47.3
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.5e-26 123.2 126 54.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 9.9e-26 120.6 108 58.3
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.7e-25 119.8 183 41.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.2e-25 119.4 64 82.8
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.2e-25 119.4 133 45.1
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.9e-25 118.2 137 49.6
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.4e-25 117.9 121 51.2
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 8.4e-25 117.5 89 61.8
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.1e-24 117.1 60 85.0
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-24 117.1 138 46.4
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.1e-24 117.1 130 46.9
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.4e-24 115.9 135 45.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.4e-24 115.9 135 45.9
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.4e-24 115.9 130 45.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.4e-24 115.9 108 52.8
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.4e-24 115.9 106 53.8
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 3.2e-24 115.5 64 79.7
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.2e-24 115.2 68 75.0
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.5e-24 114.8 114 54.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 5.5e-24 114.8 100 58.0
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 7.1e-24 114.4 65 78.5
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 7.1e-24 114.4 99 52.5
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 9.3e-24 114.0 92 59.8
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.2e-23 113.6 109 50.5
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.2e-23 113.6 128 47.7
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.6e-23 113.2 56 83.9
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 7.9e-23 110.9 119 50.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.3e-22 110.2 73 69.9
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 3.0e-22 109.0 114 51.8
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 3.9e-22 108.6 130 46.9
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.7e-22 107.8 61 77.0
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 6.7e-22 107.8 61 73.8
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 8.7e-22 107.5 108 50.9
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.9e-21 106.3 99 49.5
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.6e-21 104.8 137 45.3
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-20 103.6 115 52.2
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-20 103.6 115 52.2
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.6e-20 103.2 112 49.1
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.8e-20 102.4 107 46.7
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.8e-20 101.7 142 43.0
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 6.9e-19 97.8 52 80.8
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 6.9e-19 97.8 61 68.9
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.2e-18 97.1 117 46.2
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.5e-18 96.7 72 65.3
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 1.5e-18 96.7 115 51.3
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.5e-16 89.4 115 47.0
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 7.1e-16 87.8 116 49.1
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.8e-14 83.2 55 61.8
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 3.9e-14 82.0 57 64.9
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.5e-13 80.1 51 60.8
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.9e-13 79.7 53 62.3
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.3e-13 79.0 49 65.3
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.1e-11 73.9 98 46.9
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.1e-11 72.0 93 44.1
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.3e-11 71.6 134 37.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.9e-11 71.2 105 42.9
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 6.9e-11 71.2 61 60.7
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.2e-10 70.5 40 77.5
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.6e-07 58.5 84 44.0
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 6.1e-07 58.2 66 42.4
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 3.0e-06 55.8 70 48.6
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 3.0e-06 55.8 92 40.2
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 3.9e-06 55.5 118 33.1
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.9e-06 55.5 37 67.6


User provided reference genes

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