Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-166 589.3 289 100.0
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.6e-155 552.7 311 89.4
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-154 547.7 311 88.7
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 6.0e-150 534.3 278 94.2
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.3e-140 501.5 311 80.1
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-135 486.1 311 77.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.5e-134 481.9 311 76.8
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.4e-130 469.2 309 75.7
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-129 466.8 311 76.2
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.4e-129 464.9 311 73.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-127 459.9 308 73.1
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.9e-127 459.5 308 73.4
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.5e-126 455.3 308 73.4
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.5e-126 455.3 308 72.4
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-125 453.8 308 72.4
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.3e-125 453.4 311 71.4
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-124 449.9 311 70.7
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-124 449.9 308 71.8
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-124 449.1 308 71.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.9e-122 441.0 311 70.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.8e-121 438.0 308 69.2
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 7.6e-121 437.6 278 75.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.9e-121 437.2 309 69.6
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 8.4e-120 434.1 270 75.6
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.1e-119 431.0 276 75.4
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 6.0e-118 427.9 313 69.0
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.7e-117 426.4 311 67.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 8.7e-117 424.1 311 66.9
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 8.7e-117 424.1 311 66.9
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-116 423.3 311 66.6
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-116 422.9 309 68.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.5e-116 422.5 311 66.6
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-116 422.2 309 67.6
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 3.4e-113 412.1 310 65.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 6.4e-112 407.9 304 65.1
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 6.4e-112 407.9 296 68.9
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 6.4e-112 407.9 304 67.1
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.7e-110 402.5 276 68.5
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-109 400.6 304 65.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 5.1e-109 398.3 308 66.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.4e-108 394.4 284 67.3
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-106 389.8 288 68.4
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-104 382.5 284 68.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-100 369.4 345 56.2
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 4.5e-89 332.0 272 55.9
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.9e-89 331.6 272 57.0
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 5.0e-88 328.6 272 55.5
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.5e-88 327.8 272 55.9
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-87 327.4 250 65.2
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.4e-87 327.0 272 56.6
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.5e-87 326.2 272 54.4
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.5e-87 326.2 272 54.8
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.2e-87 325.9 272 56.6
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 4.2e-87 325.5 272 55.5
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.2e-87 325.5 272 56.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 5.5e-87 325.1 272 55.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 5.5e-87 325.1 272 54.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 5.5e-87 325.1 286 54.5
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.2e-87 324.7 222 72.5
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 7.2e-87 324.7 272 56.2
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 9.4e-87 324.3 272 55.5
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 9.4e-87 324.3 272 54.8
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.7e-86 322.8 272 53.7
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.6e-86 322.4 272 55.9
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 4.6e-86 322.0 272 55.1
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.6e-86 322.0 272 57.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.1e-86 321.6 272 55.1
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 6.1e-86 321.6 272 54.8
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.9e-86 321.2 272 55.1
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.4e-85 320.5 272 54.8
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.4e-85 320.5 272 53.7
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.3e-85 319.7 272 54.0
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 2.3e-85 319.7 272 54.8
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 2.3e-85 319.7 272 54.8
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.0e-85 319.3 272 53.3
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.9e-85 318.9 272 54.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 5.1e-85 318.5 272 54.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 6.7e-85 318.2 273 54.2
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.1e-84 317.4 273 54.6
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.1e-84 317.4 272 54.8
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.1e-84 317.4 272 54.4
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.5e-84 317.0 272 55.1
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 2.0e-84 316.6 272 56.2
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.0e-84 316.6 272 54.0
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 2.0e-84 316.6 276 55.4
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 2.0e-84 316.6 276 55.4
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 4.3e-84 315.5 272 54.0
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.3e-84 315.5 271 52.4
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 5.7e-84 315.1 272 55.1
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 5.7e-84 315.1 272 54.4
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.4e-84 314.7 272 54.8
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 7.4e-84 314.7 273 53.5
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 9.7e-84 314.3 272 55.5
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.3e-83 313.9 272 54.8
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-83 313.9 272 55.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.3e-83 313.9 276 54.7
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.7e-83 313.5 272 54.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.2e-83 313.2 273 52.7
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 2.2e-83 313.2 272 53.3
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.2e-83 313.2 272 53.7
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-83 312.8 272 53.7
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.8e-83 312.8 272 53.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.8e-83 312.8 272 54.4
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 2.8e-83 312.8 276 53.6
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.1e-82 310.8 274 56.6
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.4e-82 310.5 272 52.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.4e-82 310.5 272 54.0
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.8e-82 310.1 272 53.3
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 2.4e-82 309.7 272 54.0
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.1e-82 308.9 288 53.1
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.3e-82 308.5 272 52.6
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 9.1e-82 307.8 272 53.3
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.2e-81 307.4 272 51.8
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.2e-81 307.4 272 53.3
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.0e-81 306.6 272 53.7
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.0e-81 306.6 272 53.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 3.4e-81 305.8 252 55.6
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.5e-81 305.4 279 53.8
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 5.9e-81 305.1 274 52.9
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 5.9e-81 305.1 274 55.1
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 7.7e-81 304.7 282 51.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 5.0e-80 302.0 273 53.8
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-79 300.8 214 71.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-79 300.8 214 71.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.2e-78 297.4 272 51.8
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.6e-78 297.0 272 51.1
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 4.7e-78 295.4 271 52.0
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.0e-77 294.3 272 51.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.0e-77 294.3 273 52.4
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.4e-77 293.9 275 52.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 6.7e-77 291.6 254 53.1
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 4.4e-76 288.9 284 51.8
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 9.7e-76 287.7 272 50.4
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.7e-75 287.0 272 51.5
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.7e-75 285.8 272 51.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.1e-74 284.3 345 42.6
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.2e-73 280.8 242 55.0
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.9e-72 276.2 272 49.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.5e-71 271.9 252 52.0
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.5e-71 271.9 252 52.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-70 269.6 136 97.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.7e-70 268.9 136 97.1
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.7e-70 268.9 136 97.1
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 6.1e-70 268.5 272 48.9
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 5.2e-69 265.4 272 49.3
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.6e-68 263.1 272 48.2
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 3.3e-68 262.7 272 49.3
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 6.3e-67 258.5 272 48.9
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.8e-64 249.2 272 46.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 9.7e-60 234.6 201 55.2
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-59 234.2 143 79.0
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-59 232.6 162 77.2
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-55 220.7 111 95.5
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.6e-54 217.2 199 53.3
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.8e-53 211.8 199 50.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.8e-53 211.5 311 42.8
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.4e-52 209.1 199 50.8
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 2.3e-40 170.2 202 44.6
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 5.6e-39 165.6 145 55.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 4.0e-37 159.5 294 34.0
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 5.8e-36 155.6 275 34.2
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 7.3e-31 138.7 162 43.2
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.9e-27 126.7 169 41.4
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.2e-19 100.5 73 58.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.1e-13 81.6 139 34.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-08 64.7 57 52.6


User provided reference genes

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