Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 3.6e-109 398.3 204 100.0
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 8.3e-106 387.1 204 97.5
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 8.3e-106 387.1 204 97.5
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 3.1e-92 342.0 207 89.4
BraA07t29098Z Brassica rapa HOM05D007453 ORTHO05D009223 1.5e-83 313.2 204 84.3
A07p13280 Brassica napus HOM05D007453 ORTHO05D009223 1.4e-81 306.6 204 82.8
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 4.1e-81 305.1 209 79.9
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 1.6e-77 293.1 208 77.9
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 9.9e-75 283.9 211 74.9
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 2.9e-74 282.3 208 76.0
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 1.3e-71 273.5 206 75.7
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 3.6e-69 265.4 218 69.7
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 4.2e-65 251.9 207 70.5
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 2.1e-61 239.6 206 65.0
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 1.3e-58 230.3 208 61.1
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 3.9e-55 218.8 209 61.7
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 1.5e-54 216.9 208 60.6
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 5.6e-54 214.9 204 59.3
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 1.8e-52 209.9 204 57.8
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 1.2e-51 207.2 205 58.5
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 3.8e-50 202.2 204 56.4
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 4.9e-50 201.8 204 56.4
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 1.4e-49 200.3 210 56.7
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 1.9e-49 199.9 204 57.8
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 3.5e-48 195.7 208 55.3
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 1.8e-47 193.4 204 56.9
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.8e-47 193.4 208 55.3
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 3.0e-47 192.6 208 54.3
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 5.1e-47 191.8 209 54.5
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 8.7e-47 191.0 204 56.4
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 7.4e-46 188.0 205 57.1
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 7.4e-46 188.0 204 52.9
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 9.6e-46 187.6 204 52.5
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 2.8e-45 186.0 204 53.9
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 6.3e-45 184.9 204 56.4
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 1.1e-44 184.1 204 53.9
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 1.4e-44 183.7 204 53.4
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 5.3e-44 181.8 206 54.4
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 9.0e-44 181.0 204 52.5
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 1.2e-43 180.6 209 53.1
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 2.0e-43 179.9 206 54.4
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 2.6e-43 179.5 204 53.9
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 3.4e-43 179.1 233 48.1
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 3.4e-43 179.1 205 53.7
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 4.5e-43 178.7 204 53.4
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 5.9e-43 178.3 204 53.4
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 7.6e-43 177.9 204 53.9
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 1.3e-42 177.2 204 54.4
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 1.7e-42 176.8 204 52.0
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 2.2e-42 176.4 200 51.0
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 2.2e-42 176.4 213 50.2
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 7.2e-41 171.4 198 52.5
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.2e-40 170.6 208 51.4
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 1.2e-40 170.6 205 52.7
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 2.7e-40 169.5 209 46.4
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 2.3e-39 166.4 156 57.7
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 5.1e-39 165.2 206 50.5
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 5.1e-39 165.2 206 49.5
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 6.7e-39 164.9 162 56.2
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 1.9e-38 163.3 180 49.4
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 3.3e-38 162.5 151 58.3
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 7.4e-38 161.4 208 47.6
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 9.7e-38 161.0 215 44.2
A07p13630 Brassica napus HOM05D007453 ORTHO05D009223 9.7e-38 161.0 129 73.6
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 2.2e-37 159.8 208 49.5
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 1.4e-36 157.1 209 48.8
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 2.4e-36 156.4 151 57.0
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 1.2e-35 154.1 204 49.0
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 3.4e-35 152.5 221 43.0
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 3.4e-35 152.5 217 43.3
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 3.4e-35 152.5 204 48.5
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 4.5e-35 152.1 166 52.4
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 5.9e-35 151.8 151 55.0
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 1.0e-34 151.0 207 43.5
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 2.2e-34 149.8 213 42.3
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 2.2e-34 149.8 213 42.3
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 2.9e-34 149.4 206 50.0
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 3.8e-34 149.1 213 42.3
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 5.0e-34 148.7 235 40.4
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 1.1e-33 147.5 219 42.5
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 1.8e-31 140.2 206 40.8
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 1.1e-30 137.5 205 44.9
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 7.4e-30 134.8 213 42.3
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 6.3e-29 131.7 228 37.3
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 6.3e-29 131.7 218 38.5
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 8.2e-29 131.3 258 39.1
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 1.1e-28 131.0 217 42.9
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 1.4e-28 130.6 224 37.9
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 1.4e-28 130.6 216 43.5
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 9.1e-28 127.9 153 47.1
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 2.6e-27 126.3 202 41.6
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 3.8e-26 122.5 219 37.4
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 1.9e-25 120.2 158 44.9
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 5.5e-25 118.6 209 40.7
Lj6C173T12 Lonicera japonica HOM05D007453 ORTHO05D009223 7.9e-24 114.8 118 54.2
HPP92_001648 Vanilla planifolia HOM05D007453 ORTHO05D009223 5.7e-22 108.6 199 40.2
AUR62026455 Chenopodium quinoa HOM05D007453 ORTHO05D009223 7.4e-22 108.2 146 45.2
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 2.2e-21 106.7 205 38.0
AUR62026264 Chenopodium quinoa HOM05D007453 ORTHO05D009223 4.8e-21 105.5 135 48.1
Dinv40682 Davidia involucrata HOM05D007453 ORTHO05D009223 8.2e-21 104.8 141 43.3
HPP92_001630 Vanilla planifolia HOM05D007453 ORTHO05D009223 7.0e-12 75.1 96 47.9
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 3.6e-08 62.8 89 44.9


User provided reference genes

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