Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-80 301.2 150 100.0
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-72 274.6 152 93.4
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-67 259.6 180 78.9
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 9.5e-59 230.3 181 70.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 4.7e-58 228.0 181 68.0
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-57 226.9 181 68.0
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-57 225.7 181 67.4
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-57 225.3 181 67.4
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 4.0e-57 224.9 179 67.6
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.4e-56 221.5 181 67.4
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-55 218.4 179 66.5
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.1e-49 198.7 181 61.3
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-45 185.3 157 68.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.0e-44 182.2 181 58.6
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.9e-43 179.5 178 57.3
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 7.3e-43 177.6 164 59.8
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.4e-41 173.3 178 53.4
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 5.3e-41 171.4 178 53.4
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 9.0e-41 170.6 178 53.9
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 9.0e-41 170.6 178 53.9
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.2e-40 170.2 106 81.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 4.5e-40 168.3 178 53.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.8e-40 167.9 178 51.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-40 167.5 178 52.8
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 7.6e-40 167.5 178 51.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-39 166.8 178 52.8
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.3e-39 166.8 178 51.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-39 166.4 178 52.8
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.9e-39 165.6 179 53.1
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.8e-39 165.2 179 53.1
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.9e-39 164.9 181 50.8
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.9e-39 164.9 178 52.8
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 8.4e-39 164.1 178 48.9
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-38 163.7 178 52.2
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-38 163.3 178 51.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.4e-38 162.5 178 51.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-38 162.5 178 51.1
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-38 162.5 178 51.1
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.4e-38 162.5 178 52.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.4e-38 162.5 178 52.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.2e-38 162.2 178 51.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.2e-38 161.8 178 51.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.4e-38 161.4 173 52.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.3e-38 160.6 178 51.7
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.2e-37 160.2 178 51.1
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.6e-37 159.8 177 50.8
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.1e-37 159.5 177 50.8
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.7e-37 159.1 182 50.0
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 2.7e-37 159.1 182 50.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 3.5e-37 158.7 178 51.1
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.5e-37 158.7 177 49.7
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 7.9e-37 157.5 190 47.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.0e-36 157.1 178 50.0
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.3e-36 156.8 179 49.7
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.3e-36 156.0 178 50.6
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.3e-36 156.0 178 48.9
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-36 156.0 178 50.6
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.9e-36 155.2 177 49.7
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.5e-35 153.3 181 47.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.5e-35 153.3 178 47.8
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.5e-35 153.3 178 50.0
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.5e-35 152.5 178 48.9
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 4.3e-35 151.8 147 51.7
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 4.3e-35 151.8 181 48.6
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 7.4e-35 151.0 178 48.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 9.6e-35 150.6 179 47.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 9.6e-35 150.6 179 46.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.3e-34 150.2 177 49.7
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-34 149.4 178 47.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.1e-34 149.4 178 46.6
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.8e-34 149.1 179 49.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.7e-34 148.7 181 46.4
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 6.2e-34 147.9 181 47.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.1e-33 147.1 178 46.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 3.1e-33 145.6 179 48.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.1e-33 145.6 178 46.1
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 5.3e-33 144.8 177 46.9
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.3e-33 144.8 178 45.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 9.0e-33 144.1 178 46.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 9.0e-33 144.1 177 46.9
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.0e-32 142.9 178 46.1
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.5e-32 141.7 178 44.4
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 5.8e-32 141.4 178 46.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 5.8e-32 141.4 178 46.6
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 7.6e-32 141.0 178 44.9
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 7.6e-32 141.0 181 45.3
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 9.9e-32 140.6 178 43.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.9e-32 140.6 177 45.8
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 9.9e-32 140.6 179 44.1
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-31 140.2 181 45.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.3e-31 140.2 178 44.9
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.7e-31 139.8 178 46.6
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 2.9e-31 139.0 179 45.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.8e-31 138.7 177 45.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 6.4e-31 137.9 181 44.2
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 8.4e-31 137.5 178 44.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 8.4e-31 137.5 148 51.4
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 8.4e-31 137.5 177 45.8
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.1e-30 137.1 179 45.3
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.1e-30 137.1 177 45.8
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.4e-30 136.7 179 46.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.9e-30 136.3 177 42.9
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-30 136.0 160 47.5
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.4e-30 136.0 179 45.8
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 5.5e-30 134.8 178 42.7
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 5.5e-30 134.8 177 42.9
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 7.1e-30 134.4 166 45.8
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 7.1e-30 134.4 179 44.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 9.3e-30 134.0 181 44.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.2e-29 133.7 178 43.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 3.5e-29 132.1 112 58.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-28 130.2 166 45.2
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.8e-28 129.8 106 61.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.8e-28 129.8 179 42.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 5.1e-28 128.3 178 43.8
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.5e-27 126.7 179 41.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.9e-27 126.3 179 40.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 4.5e-24 115.2 177 40.7
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.8e-23 112.1 160 41.9
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 4.9e-23 111.7 179 38.0
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 8.4e-23 110.9 180 43.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.1e-21 106.3 93 61.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.3e-20 103.6 179 34.1
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 3.0e-20 102.4 179 35.8
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 9.7e-19 97.4 51 90.2
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.8e-18 95.9 141 39.7
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.6e-16 89.4 179 33.0
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 3.4e-16 89.0 177 35.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.8e-12 76.6 52 76.9
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.8e-12 76.6 179 34.1
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-12 75.5 106 41.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.5e-11 72.8 134 35.8
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 3.3e-11 72.4 51 74.5
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.3e-11 72.4 110 40.9
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-10 68.2 49 73.5
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 6.3e-10 68.2 49 73.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 6.3e-10 68.2 177 33.9
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.4e-09 67.0 109 40.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.0e-08 63.2 40 82.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 4.5e-08 62.0 49 67.3
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.5e-06 55.1 49 51.0


User provided reference genes

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