Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 3.5e-277 957.6 470 100.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 5.1e-276 953.7 470 99.6
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-276 953.7 470 99.6
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 5.5e-270 933.7 470 96.8
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.8e-266 921.4 472 96.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-266 920.2 470 96.0
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-260 902.1 470 94.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.4e-244 849.4 471 90.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.8e-242 840.9 470 88.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-241 839.3 470 87.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 8.5e-239 830.1 471 86.8
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.5e-238 828.6 471 86.6
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-237 826.2 470 86.0
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-237 825.1 470 85.5
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-235 819.3 470 85.5
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.0e-228 794.7 470 84.5
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-226 789.6 469 83.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 7.8e-216 753.8 469 78.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-211 740.0 470 79.1
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-210 734.9 443 81.3
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-203 712.6 471 78.1
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-201 705.7 445 80.2
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.5e-190 669.8 464 70.0
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-188 663.3 390 84.4
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 7.3e-182 641.0 468 68.4
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.1e-181 639.4 468 68.2
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-180 636.0 467 68.5
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 4.0e-180 635.2 468 67.7
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-180 634.4 449 75.1
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-179 632.5 468 67.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 6.4e-178 627.9 468 66.9
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-177 625.9 468 66.7
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 7.1e-177 624.4 469 64.8
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 6.0e-176 621.3 469 65.2
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.1e-174 617.1 461 65.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.6e-174 614.8 461 65.1
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.6e-174 614.8 461 65.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 9.6e-174 614.0 469 64.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 2.1e-173 612.8 461 64.9
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.1e-173 612.8 461 64.6
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.8e-173 612.5 459 65.4
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.2e-173 611.3 465 64.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 3.1e-172 609.0 461 64.6
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.0e-172 608.6 461 64.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.0e-172 607.4 461 64.4
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 3.4e-171 605.5 465 63.9
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 5.8e-171 604.7 468 63.5
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.2e-170 602.8 461 64.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.4e-170 601.3 469 63.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 6.4e-170 601.3 491 62.9
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-169 600.1 443 66.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.4e-169 600.1 460 64.6
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.1e-168 596.3 469 62.7
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.7e-168 595.9 461 63.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-168 595.1 439 66.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.3e-167 593.6 469 62.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.3e-167 593.6 438 64.8
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.8e-167 593.2 490 61.0
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.3e-167 592.8 468 62.6
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.3e-167 592.8 469 61.8
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.5e-166 590.1 445 65.6
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 2.5e-166 589.3 468 62.6
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 3.3e-166 589.0 460 63.7
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 5.6e-166 588.2 470 63.0
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 6.2e-165 584.7 462 61.5
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.1e-164 583.9 461 62.0
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.4e-164 583.6 475 60.8
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.4e-164 583.6 467 61.7
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.5e-163 580.1 459 61.2
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.4e-163 578.9 462 62.1
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 5.8e-163 578.2 438 65.5
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 5.8e-163 578.2 465 61.7
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.3e-162 577.0 471 61.1
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.3e-162 577.0 462 62.1
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 4.9e-162 575.1 469 61.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 6.5e-162 574.7 469 60.3
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 6.5e-162 574.7 469 60.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 6.5e-162 574.7 461 61.4
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.5e-162 574.7 459 63.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-161 573.9 463 60.7
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-161 573.2 419 68.3
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.5e-161 572.8 470 62.1
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 3.5e-160 568.9 469 58.8
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.0e-159 567.4 468 59.6
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.3e-159 567.0 461 62.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.3e-159 567.0 462 60.4
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.3e-159 567.0 471 59.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.3e-159 566.2 459 60.8
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.9e-159 565.5 469 59.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.1e-159 565.1 463 60.3
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.9e-158 563.1 469 59.3
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.5e-158 562.8 463 60.9
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.7e-158 560.8 466 60.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.4e-156 556.2 461 61.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-155 553.1 455 60.7
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 8.5e-154 547.7 440 61.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 4.2e-153 545.4 412 64.1
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.1e-152 543.1 433 62.1
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.6e-152 542.3 462 59.5
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.2e-149 533.1 464 56.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 5.3e-148 528.5 469 57.1
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.5e-147 526.9 468 56.0
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 3.8e-146 522.3 449 58.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 4.2e-145 518.8 469 55.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 8.2e-141 504.6 441 58.7
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.7e-138 496.9 465 53.1
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.1e-137 494.2 366 67.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-136 490.7 472 54.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.4e-135 487.3 462 53.0
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.4e-132 477.2 440 52.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 4.1e-132 475.7 481 55.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 7.0e-132 474.9 467 51.2
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-131 474.2 491 50.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.2e-131 474.2 460 50.4
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.0e-131 473.4 470 54.0
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.0e-127 459.5 344 65.4
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.4e-124 450.7 354 63.3
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 3.1e-124 449.5 425 53.6
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 7.0e-116 421.8 507 46.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.6e-110 403.3 459 48.1
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.5e-105 387.5 500 45.2
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.3e-98 364.4 464 42.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.8e-96 356.7 228 82.0
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 7.1e-84 315.5 435 40.5
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.1e-79 301.6 430 40.0
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-79 300.1 318 56.3
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-76 291.2 254 57.5
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 5.4e-68 262.7 192 66.7
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 9.3e-68 261.9 192 66.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.0e-67 259.2 189 66.1
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.3e-65 253.4 250 52.4
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-60 238.4 229 56.8
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 6.0e-59 232.6 222 56.3
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.1e-57 228.4 198 59.1
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-57 226.1 462 37.9
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.1e-51 207.6 149 65.1
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-42 177.6 146 69.9
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-41 174.9 146 68.5
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 8.2e-40 169.1 178 53.4
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 2.2e-37 161.0 158 58.2
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.5e-36 156.4 117 66.7
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.0e-34 152.1 156 50.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 6.7e-34 149.4 111 64.9
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 8.8e-34 149.1 214 45.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 2.8e-32 144.1 133 57.1
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 8.2e-32 142.5 103 71.8
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 9.1e-31 139.0 77 80.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-30 137.9 77 80.5
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.7e-30 136.0 116 65.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-29 134.0 214 43.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 3.2e-28 130.6 76 73.7
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 6.7e-26 122.9 69 79.7
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-23 115.5 218 41.3
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.1e-23 115.5 86 68.6
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.1e-23 114.0 56 87.5
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.3e-23 113.2 93 63.4
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.7e-22 109.4 82 61.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-21 108.6 109 52.3
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-19 100.5 103 52.4
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.2e-16 91.3 57 66.7
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 2.4e-15 87.8 51 90.2
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 2.6e-14 84.3 121 38.0
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 4.5e-14 83.6 51 88.2
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 1.7e-13 81.6 188 37.2
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.5e-13 79.7 232 27.6
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.9e-12 78.2 56 58.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 1.9e-12 78.2 76 50.0
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 4.7e-11 73.6 56 69.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.0e-10 72.4 179 29.6
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.0e-09 68.2 166 28.9
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 2.6e-09 67.8 40 80.0
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.5e-09 66.2 179 27.9
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-07 60.5 53 56.6
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 4.1e-07 60.5 43 62.8
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 5.4e-07 60.1 53 54.7
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.1e-07 59.3 78 41.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.1e-07 59.3 78 41.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.0e-06 58.2 78 41.0


User provided reference genes

Program Settings