Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 7.8e-86 320.5 166 100.0
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 1.7e-85 319.3 166 99.4
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 6.8e-82 307.4 166 95.8
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 2.9e-80 302.0 167 95.2
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 2.1e-67 259.2 164 83.5
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.7e-64 249.6 164 80.5
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 6.4e-64 247.7 151 84.1
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 6.4e-64 247.7 151 84.1
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 8.3e-64 247.3 165 80.0
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 8.3e-64 247.3 151 84.1
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 1.4e-63 246.5 151 83.4
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 1.4e-63 246.5 151 83.4
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.4e-63 246.5 157 84.7
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 7.8e-62 240.7 159 78.6
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 5.1e-61 238.0 166 77.7
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.9e-60 236.1 154 79.9
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 3.2e-55 218.8 169 73.4
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 3.2e-55 218.8 169 73.4
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 3.2e-55 218.8 169 73.4
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.1e-52 210.3 162 68.5
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 2.1e-51 206.1 156 72.4
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 1.1e-50 203.8 106 97.2
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 9.9e-49 197.2 106 95.3
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 4.8e-43 178.3 167 57.5
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.8e-42 176.4 135 72.6
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 2.4e-42 176.0 168 57.1
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 2.4e-42 176.0 135 72.6
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 9.0e-42 174.1 168 57.1
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 9.0e-42 174.1 154 57.1
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 3.4e-41 172.2 167 55.1
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 8.4e-40 167.5 167 54.5
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 8.4e-40 167.5 167 54.5
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 8.4e-40 167.5 167 54.5
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 1.1e-39 167.2 167 54.5
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.4e-39 166.8 166 53.6
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 4.2e-39 165.2 167 53.9
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.5e-33 146.7 153 49.7
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.6e-30 136.7 165 47.9
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 9.0e-26 120.9 163 42.3
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 3.5e-22 109.0 121 50.4
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.1e-18 95.9 157 35.0
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 5.3e-18 95.1 154 35.1
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 6.9e-18 94.7 144 36.8
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 6.9e-18 94.7 131 40.5
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.0e-16 90.9 141 39.0
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 6.5e-16 88.2 157 36.3
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 8.5e-16 87.8 158 34.2
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 8.5e-16 87.8 130 39.2
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 2.5e-15 86.3 158 37.3
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 2.5e-15 86.3 158 37.3
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.1e-14 83.2 161 36.0
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 2.1e-14 83.2 152 33.6
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.6e-14 82.4 142 38.0
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.6e-14 82.0 137 37.2
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 7.9e-14 81.3 149 32.9
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 1.4e-13 80.5 136 35.3
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 1.4e-13 80.5 154 33.1
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 2.3e-13 79.7 131 36.6
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 3.0e-13 79.3 151 33.1
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 3.9e-13 79.0 148 33.8
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 5.1e-13 78.6 149 34.9
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 6.7e-13 78.2 177 34.5
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 6.7e-13 78.2 166 32.5
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 6.7e-13 78.2 149 32.2
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 8.8e-13 77.8 145 33.8
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 8.8e-13 77.8 145 33.8
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 1.5e-12 77.0 151 32.5
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 2.0e-12 76.6 158 33.5
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 2.0e-12 76.6 158 33.5
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 2.0e-12 76.6 158 33.5
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 2.0e-12 76.6 158 33.5
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.0e-12 76.6 146 36.3
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 2.5e-12 76.3 142 33.1
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 2.5e-12 76.3 145 33.8
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 2.5e-12 76.3 145 33.1
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.5e-12 76.3 153 33.3
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.5e-12 76.3 131 32.8
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 3.3e-12 75.9 145 32.4
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 3.3e-12 75.9 145 33.1
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 3.3e-12 75.9 145 33.1
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 3.3e-12 75.9 149 32.9
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 7.4e-12 74.7 130 34.6
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 1.3e-11 73.9 144 33.3
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.7e-11 73.6 158 34.8
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 1.7e-11 73.6 140 33.6
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 2.2e-11 73.2 162 32.7
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.8e-11 72.8 162 32.1
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 3.7e-11 72.4 131 31.3
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 3.7e-11 72.4 158 33.5
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 4.8e-11 72.0 142 33.1
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 6.3e-11 71.6 151 31.1
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 8.2e-11 71.2 151 31.1
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 8.2e-11 71.2 151 31.1
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.1e-10 70.9 130 32.3
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.4e-10 70.5 131 31.3
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 1.4e-10 70.5 143 31.5
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.4e-10 69.7 163 29.4
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 4.1e-10 68.9 156 30.8
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 4.1e-10 68.9 163 28.2
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 6.9e-10 68.2 131 30.5
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 9.1e-10 67.8 151 30.5
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 9.1e-10 67.8 151 30.5
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 9.1e-10 67.8 160 31.2
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.2e-09 67.4 141 30.5
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.2e-09 67.4 134 31.3
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.2e-09 67.4 159 30.8
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 1.2e-09 67.4 152 30.9
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 1.5e-09 67.0 162 30.9
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 2.6e-09 66.2 140 32.1
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.6e-09 66.2 157 29.3
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 2.6e-09 66.2 151 29.1
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 5.9e-09 65.1 127 33.1
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 7.7e-09 64.7 122 32.8
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 1.3e-08 63.9 162 29.0
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.3e-08 63.9 141 31.2
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.7e-08 63.5 146 30.1
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 2.2e-08 63.2 122 32.0
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.8e-08 62.4 150 26.7
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.8e-08 62.4 150 26.7
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 6.5e-08 61.6 143 29.4
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 6.5e-08 61.6 157 26.1
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 8.5e-08 61.2 165 26.1
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 1.4e-07 60.5 147 25.9
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.9e-07 60.1 147 25.9
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.9e-07 60.1 147 25.9
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 1.9e-07 60.1 147 25.9
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 1.9e-07 60.1 150 30.7
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 1.9e-07 60.1 150 30.7
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 2.5e-07 59.7 149 27.5
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 2.5e-07 59.7 141 27.7
CSS0018735 Camellia sinensis var. sinensis HOM05D009745 ORTHO05D011350 3.2e-07 59.3 136 27.2
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 4.2e-07 58.9 157 29.3
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 5.5e-07 58.5 156 26.9
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 5.5e-07 58.5 170 30.0
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 5.5e-07 58.5 143 33.6
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 5.5e-07 58.5 150 28.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 7.2e-07 58.2 147 26.5
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 7.2e-07 58.2 164 26.8
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 7.2e-07 58.2 140 28.6
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 9.4e-07 57.8 178 28.7
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 9.4e-07 57.8 151 29.1
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 1.2e-06 57.4 146 27.4
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 1.6e-06 57.0 146 27.4
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 3.6e-06 55.8 147 25.9
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 4.7e-06 55.5 153 26.8
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 4.7e-06 55.5 146 28.1
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 6.1e-06 55.1 174 27.0
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 6.1e-06 55.1 140 27.9
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 6.1e-06 55.1 158 27.8
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 7.9e-06 54.7 162 27.8
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 7.9e-06 54.7 162 27.8
Carub.0008s0090 Capsella rubella HOM05D001445 ORTHO05D001261 7.9e-06 54.7 131 34.4
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 7.9e-06 54.7 148 27.7


User provided reference genes

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