Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 3053.1 1552 100.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2991.4 1557 98.1
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2986.1 1563 97.5
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2983.4 1556 97.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2983.4 1562 97.4
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2904.0 1560 95.4
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2783.4 1608 89.4
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2751.1 1583 89.1
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2722.2 1575 89.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2717.6 1571 88.8
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2712.2 1572 88.9
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2702.2 1577 88.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2675.6 1628 84.7
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2675.2 1597 86.3
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2674.8 1624 85.0
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2671.0 1602 85.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2630.5 1619 84.2
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2546.2 1628 81.3
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2494.5 1617 79.3
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2488.8 1573 82.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2332.8 1583 74.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2324.7 1610 74.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2324.3 1604 74.1
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2318.9 1601 74.8
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2315.4 1619 73.1
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2309.3 1605 73.4
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2308.5 1616 73.1
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2297.7 1613 73.2
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2278.8 1615 72.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2273.0 1616 72.3
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2258.4 1610 71.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2256.1 1618 71.4
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2253.4 1614 71.7
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2249.6 1627 70.9
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2243.8 1627 71.0
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2243.0 1624 70.9
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2240.7 1617 70.7
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2239.5 1613 71.2
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2234.1 1610 71.1
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2233.0 1616 71.0
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2221.0 1619 70.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2220.3 1624 70.0
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2207.9 1612 69.9
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2203.3 1619 69.6
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2202.6 1615 69.8
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2200.6 1585 71.2
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2194.1 1640 68.4
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2183.7 1621 69.2
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2176.4 1570 71.5
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2171.0 1620 69.6
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2167.1 1607 68.4
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2164.4 1610 69.8
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2163.7 1610 69.6
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2157.1 1611 69.3
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2155.6 1649 67.9
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2150.2 1614 69.0
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2149.4 1636 68.1
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2146.3 1534 72.2
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2135.9 1624 68.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2135.9 1600 68.4
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2134.4 1603 68.1
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2134.0 1594 67.3
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2127.4 1620 67.2
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2123.6 1442 75.1
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2120.5 1615 67.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2119.7 1619 67.6
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2117.4 1587 69.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2110.1 1519 71.2
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2105.1 1926 59.9
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2104.3 1618 66.3
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2102.8 1602 66.9
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2095.1 1618 65.6
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2088.9 1601 66.8
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2088.9 1630 66.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2069.3 1575 67.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2067.0 1659 64.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2056.2 1602 66.0
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2055.8 1410 73.8
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2052.3 1610 65.2
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2021.9 1517 68.5
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1979.9 1591 64.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1969.9 1592 64.5
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1966.0 1515 66.2
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1940.2 1426 71.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1915.6 1963 53.8
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1901.3 1599 62.0
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1890.5 1197 79.4
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1887.1 1605 61.4
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1876.3 1404 69.9
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1876.3 1482 65.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1842.4 1541 61.6
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1828.5 1626 60.0
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1822.8 1562 60.8
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1644.4 1530 58.8
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1631.3 1109 74.1
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1608.6 1218 67.8
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1454.9 1370 58.2
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1448.3 982 73.5
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1414.8 1417 55.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1414.4 978 73.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1375.1 1617 47.4
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1322.4 1623 45.9
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1310.0 1203 55.5
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1297.0 1536 45.8
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1183.3 1072 57.8
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1117.8 739 75.5
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 3.2e-311 1072.4 1572 43.6
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 9.9e-268 927.9 522 92.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 4.5e-260 902.5 641 73.5
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.7e-235 820.8 611 69.1
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 4.5e-228 796.2 538 74.5
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.1e-221 775.0 664 62.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 4.0e-208 729.9 618 61.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.5e-202 710.7 506 70.6
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 1.7e-195 688.0 578 62.5
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.2e-181 639.0 590 59.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.7e-180 637.5 597 58.1
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.6e-156 558.5 552 54.3
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 8.7e-155 552.7 639 49.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 5.8e-151 540.0 332 78.6
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-146 525.8 518 57.1
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.8e-144 518.5 557 52.6
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.3e-139 502.3 332 79.8
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 2.3e-139 501.5 367 72.8
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 8.2e-129 466.5 479 54.1
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.5e-126 456.4 312 75.0
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.4e-125 455.7 290 80.3
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.9e-125 455.3 485 49.5
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.3e-121 442.6 414 58.2
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.3e-121 442.6 513 49.1
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.3e-113 416.0 318 68.2
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.2e-110 405.2 356 58.7
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.6e-108 399.1 408 53.2
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.7e-108 398.3 314 66.9
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 4.8e-97 360.9 246 72.8
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.0e-90 339.0 382 49.7
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.3e-77 295.0 227 63.9
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-68 266.2 219 64.4
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.7e-65 255.0 155 77.4
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 8.3e-65 253.8 152 78.9
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.4e-59 236.5 142 78.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 4.0e-51 208.4 142 64.1
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.9e-49 201.4 146 71.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 9.3e-48 197.2 204 53.9
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.1e-47 196.1 121 80.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 4.8e-44 184.9 129 75.2
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-34 153.3 143 60.1
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 5.8e-34 151.4 143 60.1
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.9e-34 150.6 143 60.1
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-32 147.1 93 75.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.5e-32 144.8 94 72.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 6.0e-31 141.4 85 77.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.8e-30 139.8 94 68.1
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.7e-30 137.5 137 52.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-26 126.7 130 56.9
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.6e-26 125.9 96 64.6
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.5e-26 125.2 130 56.2
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.1e-24 120.6 76 69.7
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.7e-17 96.7 88 56.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.9e-17 95.9 88 55.7
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.8e-17 95.5 91 60.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.0e-17 95.1 75 62.7
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.3e-14 86.3 82 54.9
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 3.9e-14 85.5 49 71.4
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.4e-13 81.3 56 69.6
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-11 77.4 54 66.7
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.2e-09 69.7 55 54.5
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 6.5e-09 68.2 54 63.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.9e-08 66.6 44 70.5
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 9.4e-08 64.3 50 60.0


User provided reference genes

Program Settings