Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 2.2e-25 118.2 62 100.0
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-18 95.9 59 89.8
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 5.0e-14 80.5 48 87.5
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-12 75.1 54 77.8
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-12 75.1 38 97.4
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.3e-11 71.6 57 75.4
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.3e-11 71.6 56 76.8
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-10 69.3 59 69.5
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.5e-10 68.9 57 73.7
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.0e-10 68.6 57 73.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 2.6e-10 68.2 58 70.7
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 3.4e-10 67.8 59 69.5
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.4e-10 67.4 56 73.2
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.7e-09 65.5 57 73.7
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.9e-09 64.7 54 74.1
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.9e-09 64.7 48 72.9
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.9e-09 63.9 55 69.1
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 4.9e-09 63.9 44 72.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.3e-09 63.2 56 66.1
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.4e-08 62.4 56 64.3
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.9e-08 62.0 49 69.4
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.9e-08 62.0 50 66.0
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.2e-08 61.2 47 72.3
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 4.1e-08 60.8 48 68.8
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 4.1e-08 60.8 48 68.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 4.1e-08 60.8 43 65.1
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 5.4e-08 60.5 49 69.4
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 7.1e-08 60.1 58 67.2
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 9.2e-08 59.7 43 69.8
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 9.2e-08 59.7 37 75.7
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-07 59.3 52 63.5
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-07 59.3 36 77.8
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.2e-07 59.3 48 66.7
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.6e-07 58.9 56 64.3
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.6e-07 58.9 43 69.8
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 2.1e-07 58.5 39 76.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 4.6e-07 57.4 43 67.4
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 7.8e-07 56.6 36 75.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 7.8e-07 56.6 43 62.8
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.0e-06 56.2 56 62.5
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-06 56.2 29 89.7
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.0e-06 56.2 29 89.7
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.0e-06 56.2 46 63.0
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.0e-06 56.2 42 69.0
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.0e-06 56.2 45 66.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.0e-06 56.2 41 63.4
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-06 55.8 52 63.5
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.3e-06 55.8 45 64.4
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-06 55.8 45 64.4
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.7e-06 55.5 42 69.0
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-06 55.5 45 66.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.7e-06 55.5 44 65.9
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.7e-06 55.5 44 65.9
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.3e-06 55.1 39 69.2
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.3e-06 55.1 39 66.7
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.3e-06 55.1 41 65.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.3e-06 55.1 42 66.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.3e-06 55.1 43 67.4
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 3.0e-06 54.7 57 52.6
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 3.0e-06 54.7 39 74.4
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 3.0e-06 54.7 52 59.6
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.9e-06 54.3 53 52.8
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.9e-06 54.3 46 60.9
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.9e-06 54.3 48 62.5
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.9e-06 54.3 48 62.5
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.9e-06 54.3 42 66.7
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.9e-06 54.3 43 65.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.9e-06 54.3 37 73.0
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 3.9e-06 54.3 31 80.6
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.9e-06 54.3 43 65.1
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 5.1e-06 53.9 43 65.1
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.1e-06 53.9 39 71.8
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.1e-06 53.9 39 71.8
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.1e-06 53.9 39 71.8
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 5.1e-06 53.9 39 71.8
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 5.1e-06 53.9 37 75.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 5.1e-06 53.9 29 79.3
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 6.6e-06 53.5 43 65.1
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 8.6e-06 53.1 43 62.8
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 8.6e-06 53.1 29 79.3
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 8.6e-06 53.1 29 79.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 8.6e-06 53.1 43 62.8


User provided reference genes

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