Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 3.9e-148 528.1 264 100.0
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-136 488.8 264 93.9
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-130 469.9 279 87.1
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 2.8e-130 468.8 282 86.5
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.8e-103 378.6 314 65.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 5.2e-100 368.2 315 64.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 8.8e-100 367.5 313 64.9
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.3e-97 358.2 319 62.1
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 4.7e-93 345.1 316 62.3
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.2e-91 340.5 315 60.3
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.3e-90 337.0 316 60.8
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-89 334.0 315 60.0
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-89 334.0 315 60.0
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-89 334.0 315 60.0
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.0e-88 329.7 313 59.7
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 3.8e-87 325.5 314 58.9
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 6.5e-87 324.7 161 100.0
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 9.4e-86 320.9 310 59.0
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-63 246.9 320 47.5
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-62 242.7 328 46.3
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-62 242.7 328 46.3
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 3.3e-62 242.7 328 46.3
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-61 240.4 325 47.1
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-59 233.4 327 46.2
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-58 230.3 333 44.4
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.9e-58 229.6 348 44.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 8.3e-58 228.0 346 44.5
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 6.0e-56 221.9 351 41.9
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.3e-55 219.9 333 43.5
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 5.1e-55 218.8 320 47.5
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 8.6e-55 218.0 347 42.7
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-54 217.6 306 45.4
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-54 217.2 306 45.1
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.5e-54 217.2 310 44.8
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.5e-54 216.5 346 43.6
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 4.3e-54 215.7 306 45.1
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 5.6e-54 215.3 295 46.4
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 7.3e-54 214.9 351 43.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 9.5e-54 214.5 316 44.3
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 9.5e-54 214.5 311 45.0
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 6.2e-53 211.8 350 42.6
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 8.4e-50 201.4 353 39.9
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-47 194.1 348 39.1
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-47 194.1 348 39.1
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-47 194.1 348 39.1
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.7e-42 177.2 352 36.9
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 2.2e-42 176.8 344 39.5
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.4e-42 174.9 352 36.9
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.9e-41 173.7 351 36.2
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 5.4e-41 172.2 352 36.4
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.1e-41 171.8 352 36.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.2e-40 171.0 351 36.5
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 7.8e-40 168.3 347 35.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.3e-39 167.5 349 38.1
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.3e-39 166.8 339 37.5
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 3.0e-39 166.4 315 38.1
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.9e-39 166.0 337 38.0
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.9e-39 166.0 338 38.8
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.9e-38 163.7 359 36.5
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.5e-38 163.3 318 38.4
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.3e-38 162.9 336 37.5
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.3e-38 162.5 340 37.4
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 5.6e-38 162.2 335 36.4
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 7.3e-38 161.8 345 37.1
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.3e-37 161.0 331 38.1
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.6e-37 160.6 278 40.3
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 2.1e-37 160.2 341 36.7
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.8e-37 159.8 322 37.6
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.6e-37 159.5 356 35.7
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 3.6e-37 159.5 337 36.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.6e-37 159.5 362 34.8
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 3.6e-37 159.5 348 37.4
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 6.2e-37 158.7 343 36.7
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.1e-36 157.9 345 35.4
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.8e-36 157.1 352 36.1
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.8e-36 157.1 358 36.0
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 4.0e-36 156.0 360 35.3
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.6e-35 153.3 338 37.0
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.6e-35 153.3 342 37.4
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.4e-35 152.9 341 38.1
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.4e-35 152.9 342 37.1
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 5.8e-35 152.1 366 35.0
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 9.9e-35 151.4 360 35.3
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.7e-34 150.6 338 34.9
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 6.4e-34 148.7 313 37.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 6.4e-34 148.7 308 39.6
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 8.4e-34 148.3 268 38.4
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.4e-33 147.5 339 35.1
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.2e-33 146.0 311 37.6
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 5.4e-33 145.6 350 35.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 7.1e-33 145.2 262 37.8
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 7.1e-33 145.2 361 34.6
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 7.1e-33 145.2 313 36.7
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.6e-32 144.1 342 35.7
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 2.1e-32 143.7 338 34.9
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.7e-32 143.3 336 34.8
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.7e-32 143.3 340 34.4
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 3.5e-32 142.9 355 34.9
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.0e-31 141.4 369 33.1
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.7e-31 140.6 323 33.4
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.7e-31 140.6 307 36.2
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 3.0e-31 139.8 331 32.6
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 3.9e-31 139.4 354 34.5
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 5.1e-31 139.0 334 35.9
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 5.1e-31 139.0 341 34.0
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.6e-31 138.7 330 34.5
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 6.6e-31 138.7 289 37.7
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.5e-30 137.5 363 33.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.9e-30 137.1 351 34.5
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 1.9e-30 137.1 340 33.5
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.5e-30 136.7 337 32.6
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.6e-30 135.6 329 34.7
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.6e-30 134.8 264 39.4
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.3e-29 134.4 353 33.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.3e-29 134.4 349 31.5
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.3e-29 134.4 311 37.0
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.3e-29 134.4 275 37.5
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.3e-29 134.4 336 33.6
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 2.1e-29 133.7 358 32.4
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 8.1e-29 131.7 325 33.8
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.1e-28 131.3 318 35.2
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.4e-28 131.0 343 31.5
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.4e-28 130.2 360 31.7
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 6.9e-28 128.6 360 31.4
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 9.0e-28 128.3 338 36.1
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 4.5e-27 125.9 337 32.0
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.9e-27 124.8 311 35.0
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.3e-26 124.4 369 32.2
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.3e-26 124.4 333 33.3
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.9e-26 123.2 318 34.0
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.9e-26 123.2 319 33.2
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 4.9e-26 122.5 268 35.4
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 6.4e-26 122.1 324 32.1
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 9.3e-25 118.2 321 33.6
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.2e-24 117.9 332 33.1
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 2.7e-24 116.7 334 32.6
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.5e-24 116.3 316 32.3
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.5e-24 116.3 356 32.0
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 4.6e-24 115.9 309 33.0
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 6.0e-24 115.5 326 29.4
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.3e-23 114.4 265 36.2
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-22 110.9 311 34.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.5e-22 110.2 162 45.1
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.3e-22 109.8 318 33.3
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 5.6e-22 109.0 336 29.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 5.6e-22 109.0 304 33.9
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 7.4e-22 108.6 164 42.1
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 6.2e-21 105.5 333 31.5
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 6.2e-21 105.5 312 30.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.4e-20 104.4 333 30.0
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 3.1e-20 103.2 363 30.0
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 1.5e-19 100.9 347 31.7
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 2.0e-19 100.5 310 32.6
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 3.4e-19 99.8 146 41.8
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.0e-18 98.2 277 30.3
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.9e-18 95.9 321 28.7
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.9e-17 94.0 191 34.0
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.9e-17 94.0 389 28.0
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.5e-17 93.6 302 31.5
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.5e-17 93.6 286 31.8
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 3.2e-17 93.2 76 67.1
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 5.5e-17 92.4 326 30.4
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-16 89.7 51 76.5
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 3.5e-16 89.7 51 76.5
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 4.6e-16 89.4 116 50.9
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 6.0e-16 89.0 158 38.6
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-15 87.8 77 61.0
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.3e-15 87.8 305 29.8
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.8e-15 87.4 404 27.0
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.5e-14 84.3 238 31.1
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.2e-09 66.2 172 33.1
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 6.1e-08 62.4 193 30.6
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 6.1e-08 62.4 141 31.9


User provided reference genes

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