Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 5.8e-46 187.2 94 100.0
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 5.8e-46 187.2 94 100.0
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 5.8e-46 187.2 94 100.0
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 3.3e-41 171.4 101 87.1
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 1.3e-40 169.5 101 88.1
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 1.3e-40 169.5 95 91.6
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 1.3e-40 169.5 95 91.6
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 1.3e-40 169.5 95 91.6
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 1.3e-40 169.5 95 91.6
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.6e-40 169.1 94 90.4
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.6e-40 169.1 94 90.4
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 2.1e-40 168.7 97 88.7
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 2.8e-40 168.3 95 90.5
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 2.8e-40 168.3 94 89.4
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 6.2e-40 167.2 96 89.6
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 8.1e-40 166.8 84 96.4
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 1.1e-39 166.4 95 89.5
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 4.0e-39 164.5 93 86.0
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 5.3e-39 164.1 84 95.2
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 2.0e-38 162.2 99 83.8
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 6.4e-37 157.1 79 97.5
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 1.1e-36 156.4 86 88.4
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 1.1e-33 146.4 89 82.0
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 1.9e-33 145.6 93 74.2
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 9.6e-33 143.3 91 80.2
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 2.1e-32 142.1 95 74.7
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 2.8e-32 141.7 89 77.5
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 4.8e-32 141.0 89 79.8
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 6.2e-32 140.6 90 77.8
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 6.2e-32 140.6 94 74.5
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 2.4e-31 138.7 88 77.3
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 4.0e-31 137.9 95 73.7
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 4.0e-31 137.9 91 71.4
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 5.3e-31 137.5 91 71.4
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 6.9e-31 137.1 92 75.0
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 6.9e-31 137.1 79 82.3
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 9.0e-31 136.7 84 77.4
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 9.0e-31 136.7 82 80.5
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 9.0e-31 136.7 92 75.0
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 9.0e-31 136.7 95 73.7
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 9.0e-31 136.7 95 74.7
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 1.2e-30 136.3 85 81.2
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 1.5e-30 136.0 83 78.3
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.5e-30 136.0 89 73.0
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.5e-30 136.0 89 73.0
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 2.0e-30 135.6 85 80.0
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 2.0e-30 135.6 85 80.0
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 2.6e-30 135.2 85 74.1
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 2.6e-30 135.2 82 73.2
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 2.6e-30 135.2 90 74.4
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 2.6e-30 135.2 82 75.6
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 3.4e-30 134.8 93 71.0
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 3.4e-30 134.8 91 73.6
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 3.4e-30 134.8 95 72.6
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 3.4e-30 134.8 96 74.0
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 3.4e-30 134.8 99 65.7
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 3.4e-30 134.8 89 73.0
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 4.5e-30 134.4 82 76.8
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 7.6e-30 133.7 91 78.0
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 7.6e-30 133.7 91 73.6
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 7.6e-30 133.7 91 70.3
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 7.6e-30 133.7 91 70.3
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 9.9e-30 133.3 84 72.6
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 1.3e-29 132.9 83 77.1
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 1.3e-29 132.9 91 74.7
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 1.3e-29 132.9 91 72.5
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 1.3e-29 132.9 91 74.7
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 1.3e-29 132.9 82 75.6
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 1.3e-29 132.9 91 72.5
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 1.3e-29 132.9 93 72.0
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 1.7e-29 132.5 87 73.6
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 1.7e-29 132.5 82 79.3
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 2.2e-29 132.1 90 71.1
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 2.2e-29 132.1 85 78.8
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 2.2e-29 132.1 86 75.6
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 4.9e-29 131.0 91 71.4
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 6.4e-29 130.6 87 75.9
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 6.4e-29 130.6 87 75.9
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 6.4e-29 130.6 87 75.9
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 6.4e-29 130.6 81 71.6
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 8.4e-29 130.2 90 71.1
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 1.1e-28 129.8 91 70.3
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 1.4e-28 129.4 91 69.2
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 1.9e-28 129.0 66 95.5
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 1.9e-28 129.0 83 74.7
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.9e-28 129.0 90 71.1
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 2.5e-28 128.6 82 75.6
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 3.2e-28 128.3 83 73.5
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 3.2e-28 128.3 87 70.1
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 4.2e-28 127.9 72 80.6
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 5.5e-28 127.5 90 71.1
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 5.5e-28 127.5 93 73.1
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 9.3e-28 126.7 91 70.3
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 9.3e-28 126.7 80 76.2
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 1.6e-27 125.9 91 69.2
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 1.6e-27 125.9 78 78.2
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 1.6e-27 125.9 75 78.7
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 2.7e-27 125.2 91 67.0
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 3.5e-27 124.8 109 61.5
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 4.6e-27 124.4 87 70.1
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 6.0e-27 124.0 103 63.1
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 1.3e-26 122.9 91 68.1
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 5.1e-26 120.9 106 61.3
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 5.1e-26 120.9 81 70.4
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 2.5e-25 118.6 105 60.0
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 3.7e-24 114.8 77 71.4
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 4.8e-24 114.4 81 66.7
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 6.2e-24 114.0 76 73.7
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.4e-23 112.8 77 74.0
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 1.8e-23 112.5 71 74.6
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 5.3e-23 110.9 79 73.4
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 9.0e-23 110.2 99 57.6
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 1.2e-22 109.8 75 69.3
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 2.0e-22 109.0 65 80.0
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 2.0e-22 109.0 71 76.1
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 3.4e-22 108.2 82 65.9
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 7.6e-22 107.1 97 60.8
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 6.5e-21 104.0 65 73.8
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 6.0e-19 97.4 74 62.2
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 4.1e-15 84.7 85 52.9
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 4.5e-14 81.3 47 80.9
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 4.5e-14 81.3 70 54.3
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 5.9e-14 80.9 63 65.1
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 7.7e-14 80.5 80 56.2
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 2.9e-13 78.6 64 54.7
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-12 74.3 48 77.1
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-12 74.3 48 77.1
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-12 74.3 48 77.1
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 6.1e-11 70.9 52 65.4
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 7.9e-11 70.5 49 63.3
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 3.9e-10 68.2 48 64.6
BcaB01g03422 Brassica carinata HOM05D037851 ORTHO05D006822 3.7e-08 61.6 100 47.0
BcaB02g06981 Brassica carinata HOM05D037851 ORTHO05D006822 3.7e-08 61.6 100 47.0
BcaB02g06986 Brassica carinata HOM05D037851 ORTHO05D006822 3.7e-08 61.6 100 47.0


User provided reference genes

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