Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 7.2e-57 223.8 121 100.0
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 7.2e-57 223.8 121 100.0
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 1.8e-55 219.2 120 98.3
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 1.8e-55 219.2 118 100.0
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 1.8e-55 219.2 120 98.3
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 2.2e-53 212.2 119 95.8
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 1.1e-49 199.9 121 90.1
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 1.5e-49 199.5 121 91.7
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 1.5e-49 199.5 121 91.7
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 1.5e-49 199.5 121 91.7
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 2.5e-49 198.7 121 89.3
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 3.2e-49 198.4 121 86.8
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 4.2e-49 198.0 121 89.3
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 5.5e-49 197.6 121 90.1
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 5.5e-49 197.6 121 86.0
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 5.5e-49 197.6 121 86.8
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 7.2e-49 197.2 121 90.9
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 9.4e-49 196.8 122 87.7
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 6.1e-48 194.1 123 83.7
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 3.0e-47 191.8 116 86.2
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 4.8e-45 184.5 121 82.6
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 6.3e-45 184.1 121 83.5
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 9.1e-44 180.3 148 70.3
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 5.9e-43 177.6 116 81.9
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 1.0e-42 176.8 121 77.7
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 1.3e-42 176.4 121 76.9
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 2.2e-42 175.6 116 79.3
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 3.8e-42 174.9 121 75.2
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 5.0e-42 174.5 121 77.7
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 6.5e-42 174.1 121 76.9
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 1.1e-41 173.3 121 76.9
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 1.1e-41 173.3 119 78.2
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 1.1e-41 173.3 116 79.3
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 1.5e-41 172.9 121 75.2
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.5e-41 172.9 121 75.2
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 1.5e-41 172.9 121 76.0
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 1.9e-41 172.6 121 76.9
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 2.5e-41 172.2 116 78.4
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 2.5e-41 172.2 121 76.9
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 2.5e-41 172.2 121 76.0
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 2.5e-41 172.2 116 76.7
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 3.2e-41 171.8 116 75.9
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 4.2e-41 171.4 121 74.4
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 5.5e-41 171.0 121 74.4
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 5.5e-41 171.0 121 75.2
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 5.5e-41 171.0 121 76.0
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 7.2e-41 170.6 121 74.4
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 9.5e-41 170.2 116 75.9
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 9.5e-41 170.2 121 75.2
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 9.5e-41 170.2 121 75.2
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 1.2e-40 169.9 116 75.9
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 1.2e-40 169.9 116 75.9
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 1.6e-40 169.5 116 75.0
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 2.1e-40 169.1 116 75.9
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 2.8e-40 168.7 116 75.9
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 3.6e-40 168.3 116 75.9
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 3.6e-40 168.3 121 72.7
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 4.7e-40 167.9 116 75.9
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 4.7e-40 167.9 116 75.9
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 4.7e-40 167.9 113 77.9
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 6.1e-40 167.5 116 76.7
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 6.1e-40 167.5 121 74.4
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 6.1e-40 167.5 116 75.9
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 8.0e-40 167.2 120 75.0
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 8.0e-40 167.2 116 73.3
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 1.0e-39 166.8 118 74.6
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 1.0e-39 166.8 116 75.0
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 1.4e-39 166.4 116 73.3
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 1.8e-39 166.0 118 73.7
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 1.8e-39 166.0 116 75.0
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 1.8e-39 166.0 121 73.6
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 1.8e-39 166.0 118 73.7
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 2.3e-39 165.6 121 71.9
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 3.0e-39 165.2 116 73.3
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 3.0e-39 165.2 116 75.0
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 4.0e-39 164.9 119 73.1
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 4.0e-39 164.9 121 73.6
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 4.0e-39 164.9 121 71.9
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 5.2e-39 164.5 121 73.6
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 8.8e-39 163.7 116 73.3
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 1.2e-38 163.3 119 73.1
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 1.5e-38 162.9 119 72.3
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 2.0e-38 162.5 116 70.7
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 5.7e-38 161.0 122 72.1
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 5.7e-38 161.0 122 72.1
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 5.7e-38 161.0 116 70.7
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 7.5e-38 160.6 121 71.1
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 7.5e-38 160.6 119 72.3
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 7.5e-38 160.6 121 70.2
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 9.8e-38 160.2 121 71.1
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 9.8e-38 160.2 116 72.4
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 1.3e-37 159.8 123 69.1
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 2.2e-37 159.1 116 69.8
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 4.9e-37 157.9 119 73.9
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 6.3e-37 157.5 110 74.5
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 6.3e-37 157.5 117 70.9
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 2.4e-36 155.6 116 71.6
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 3.1e-36 155.2 121 67.8
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 4.1e-36 154.8 107 74.8
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 5.4e-36 154.5 116 70.7
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 7.0e-36 154.1 121 68.6
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 9.2e-36 153.7 126 75.4
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 2.0e-35 152.5 121 67.8
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 7.8e-35 150.6 132 65.9
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 6.6e-34 147.5 171 52.6
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 3.3e-33 145.2 121 65.3
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 3.0e-31 138.7 126 61.9
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 5.2e-31 137.9 112 64.3
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 3.4e-30 135.2 114 64.0
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 7.5e-30 134.0 121 62.0
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 2.9e-29 132.1 90 77.8
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 4.9e-29 131.3 114 62.3
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 6.4e-29 131.0 90 74.4
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 1.1e-28 130.2 90 75.6
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 2.0e-27 125.9 90 74.4
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 2.0e-27 125.9 93 72.0
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 1.3e-26 123.2 101 64.4
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 9.8e-22 107.1 68 80.9
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 2.3e-18 95.9 70 68.6
Haze_17997 Corylus avellana HOM05D001650 ORTHO05D001592 1.1e-15 87.0 108 43.5
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 5.8e-14 81.3 57 78.9
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 1.3e-13 80.1 59 76.3
CSS0043705 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 4.6e-11 71.6 46 76.1
SGA_v2.0_scaffold28G11977 Striga asiatica HOM05D006317 ORTHO05D007852 4.3e-09 65.1 51 72.5
QL05p046423 Quercus lobata HOM05D006317 ORTHO05D007852 8.1e-08 60.8 48 66.7
BcaC05g26083 Brassica carinata HOM05D006317 ORTHO05D007852 5.2e-07 58.2 49 71.4


User provided reference genes

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