Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 4.9e-110 401.4 233 100.0
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 4.9e-110 401.4 233 100.0
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 5.9e-108 394.4 234 98.7
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 9.8e-103 377.1 233 94.4
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 8.3e-102 374.0 233 94.0
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 1.7e-94 349.7 234 80.3
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 1.2e-89 333.6 234 77.8
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 1.4e-88 330.1 233 85.0
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 2.0e-87 326.2 230 77.4
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 2.6e-87 325.9 232 76.7
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 7.5e-87 324.3 230 77.0
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 7.5e-87 324.3 230 77.0
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 9.8e-87 323.9 230 77.0
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 2.2e-86 322.8 230 76.5
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 2.2e-86 322.8 232 76.3
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 2.7e-84 315.8 229 74.7
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 1.6e-81 306.6 232 74.6
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 8.7e-67 257.7 194 74.2
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 4.3e-66 255.4 235 71.9
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 3.0e-59 232.6 178 70.8
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.5e-58 230.3 178 69.7
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 1.2e-44 184.1 185 56.8
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 3.5e-44 182.6 173 57.2
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 3.5e-44 182.6 190 54.7
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 1.3e-41 174.1 186 53.2
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.3e-41 174.1 174 56.3
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 1.6e-41 173.7 186 54.8
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 2.2e-41 173.3 186 53.8
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 4.8e-41 172.2 185 55.1
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 6.3e-41 171.8 167 57.5
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 6.3e-41 171.8 184 50.5
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.1e-40 169.1 187 52.9
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.1e-40 169.1 187 52.9
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 4.1e-40 169.1 185 54.6
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 4.1e-40 169.1 182 52.7
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 4.1e-40 169.1 184 50.5
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 5.3e-40 168.7 174 54.6
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 5.3e-40 168.7 186 53.2
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 6.9e-40 168.3 185 53.5
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 6.9e-40 168.3 185 52.4
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 9.0e-40 167.9 187 52.4
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 9.0e-40 167.9 187 52.4
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 9.0e-40 167.9 181 51.9
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.5e-39 167.2 187 52.9
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 1.5e-39 167.2 190 55.3
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 1.5e-39 167.2 168 56.0
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.6e-39 166.4 172 52.9
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 3.4e-39 166.0 174 53.4
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 5.9e-39 165.2 179 51.4
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 1.0e-38 164.5 181 51.4
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.3e-38 164.1 186 53.8
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 2.2e-38 163.3 183 50.8
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 3.8e-38 162.5 174 52.3
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 3.8e-38 162.5 180 51.7
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 5.0e-38 162.2 186 52.2
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 6.5e-38 161.8 235 46.0
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 1.1e-37 161.0 190 51.1
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 1.9e-37 160.2 182 51.6
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.9e-37 160.2 182 51.1
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.9e-37 160.2 239 42.3
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 2.5e-37 159.8 185 50.8
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 3.2e-37 159.5 192 50.0
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 5.5e-37 158.7 222 44.6
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 5.5e-37 158.7 186 47.8
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 7.2e-37 158.3 238 42.4
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 1.2e-36 157.5 186 46.8
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 3.6e-36 156.0 179 51.4
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 6.1e-36 155.2 189 51.3
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 7.9e-36 154.8 234 42.7
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.0e-35 154.5 170 49.4
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 1.3e-35 154.1 186 49.5
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 3.0e-35 152.9 186 48.4
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 6.7e-35 151.8 188 47.9
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 1.5e-34 150.6 184 49.5
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 1.5e-34 150.6 184 49.5
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 2.5e-34 149.8 191 48.2
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 2.5e-34 149.8 246 39.8
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 5.7e-34 148.7 243 40.7
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 5.7e-34 148.7 185 49.7
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 5.7e-34 148.7 231 40.3
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 1.7e-33 147.1 188 46.8
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 2.8e-33 146.4 183 47.0
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 3.7e-33 146.0 187 50.8
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 3.7e-33 146.0 186 46.2
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 1.8e-32 143.7 165 47.9
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 1.8e-32 143.7 167 47.9
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 4.1e-32 142.5 189 47.6
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 6.9e-32 141.7 192 45.8
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 9.1e-32 141.4 185 45.4
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 1.2e-31 141.0 186 44.6
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 2.6e-31 139.8 175 49.1
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 3.4e-31 139.4 198 48.0
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 3.4e-31 139.4 230 40.9
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 3.4e-31 139.4 182 46.7
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 3.4e-31 139.4 196 43.9
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 1.0e-30 137.9 178 47.2
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 1.7e-30 137.1 186 47.8
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 2.2e-30 136.7 168 47.6
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 5.0e-30 135.6 187 41.2
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 6.5e-30 135.2 180 47.2
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 8.5e-30 134.8 184 45.7
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 1.1e-29 134.4 186 47.3
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 1.4e-29 134.0 183 46.4
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 7.2e-29 131.7 178 48.9
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 2.7e-28 129.8 162 48.1
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 4.7e-28 129.0 158 45.6
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 4.7e-28 129.0 187 39.6
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 1.0e-27 127.9 177 45.8
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.8e-27 127.1 240 34.2
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 3.0e-27 126.3 205 41.0
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 5.1e-27 125.6 240 36.7
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 8.8e-27 124.8 179 41.3
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 1.1e-26 124.4 180 43.9
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 2.0e-26 123.6 142 48.6
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 2.6e-26 123.2 178 47.2
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 2.8e-25 119.8 168 45.8
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 3.1e-24 116.3 112 53.6
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 6.9e-24 115.2 167 40.1
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 5.5e-21 105.5 165 39.4
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 1.6e-20 104.0 158 39.2
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 1.2e-15 87.8 147 39.5
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.5e-13 80.9 177 36.7
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 2.5e-13 80.1 186 38.2
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 5.7e-10 68.9 107 42.1
SMO358G0407 Selaginella moellendorffii HOM05D024008 ORTHO05D000523 5.0e-06 55.8 112 38.4


User provided reference genes

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