Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34675 Brassica carinata HOM05D000641 ORTHO05D000944 7.7e-139 497.3 275 100.0
BcaC06g34673 Brassica carinata HOM05D000641 ORTHO05D000944 5.9e-131 471.1 250 100.0
BolC7t43093H Brassica oleracea HOM05D000641 ORTHO05D000944 3.7e-125 451.8 252 96.4
C07p25730 Brassica napus HOM05D000641 ORTHO05D000944 4.8e-125 451.4 252 96.4
BraA06t27670Z Brassica rapa HOM05D000641 ORTHO05D000944 1.7e-82 310.1 259 74.5
Sp2g07940 Schrenkiella parvula HOM05D000641 ORTHO05D000944 4.4e-78 295.4 288 67.4
BcaC06g31718 Brassica carinata HOM05D000641 ORTHO05D000944 1.3e-77 293.9 270 73.3
CARHR180750 Cardamine hirsuta HOM05D000641 ORTHO05D000944 5.1e-42 175.6 318 47.2
AL8G17490 Arabidopsis lyrata HOM05D000641 ORTHO05D000944 1.0e-37 161.4 308 45.5
AT5G43155 Arabidopsis thaliana HOM05D000641 ORTHO05D000944 5.5e-36 155.6 254 50.8
Carub.0008s0553 Capsella rubella HOM05D000641 ORTHO05D000944 9.3e-36 154.8 333 44.1
Aa31LG9G13250 Aethionema arabicum HOM05D000641 ORTHO05D000944 1.0e-34 151.4 208 53.8
THA.LOC104814682 Tarenaya hassleriana HOM05D000641 ORTHO05D000944 3.8e-29 132.9 237 46.8
FvH4_2g33270 Fragaria vesca HOM05D000641 ORTHO05D000944 1.0e-18 98.2 214 39.7
FAN24G0570 Fragaria x ananassa HOM05D000641 ORTHO05D000944 1.0e-18 98.2 214 39.7
Prupe.1G424500 Prunus persica HOM05D000641 ORTHO05D000944 2.6e-17 93.6 219 41.6
FAN15G3605 Fragaria x ananassa HOM05D000641 ORTHO05D000944 3.3e-17 93.2 214 38.8
Hma1.2p1_1174F.1_g263800 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 9.7e-17 91.7 232 40.1
RcHm_v2.0_Chr6g0309371 Rosa chinensis HOM05D000641 ORTHO05D000944 1.3e-16 91.3 215 38.1
Cfa013676 Carpinus fangiana HOM05D000641 ORTHO05D000944 2.8e-16 90.1 215 40.9
FAN20G1023 Fragaria x ananassa HOM05D000641 ORTHO05D000944 8.2e-16 88.6 232 38.4
GSVIVG01009361001 Vitis vinifera HOM05D000641 ORTHO05D000944 1.8e-15 87.4 211 40.8
Duzib116G0728 Durio zibethinus HOM05D000641 ORTHO05D000944 4.1e-15 86.3 229 38.0
MD08G1086900 Malus domestica HOM05D000641 ORTHO05D000944 4.1e-15 86.3 216 40.7
Potri.014G017500 Populus trichocarpa HOM05D000641 ORTHO05D000944 1.2e-14 84.7 220 39.5
FAN27G0288 Fragaria x ananassa HOM05D000641 ORTHO05D000944 3.5e-14 83.2 232 37.5
DCAR_029116 Daucus carota HOM05D000641 ORTHO05D000944 5.9e-14 82.4 211 36.0
MD15G1071600 Malus domestica HOM05D000641 ORTHO05D000944 5.9e-14 82.4 215 40.5
Potri.002G119500 Populus trichocarpa HOM05D000641 ORTHO05D000944 1.3e-13 81.3 245 35.5
Cpa.g.sc21.101 Carica papaya HOM05D000641 ORTHO05D000944 6.5e-13 79.0 197 40.6
DCAR_001683 Daucus carota HOM05D000641 ORTHO05D000944 6.5e-13 79.0 273 33.0
Sed0012085 Sechium edule HOM05D000641 ORTHO05D000944 1.9e-12 77.4 224 37.5
Gohir.A06G023300 Gossypium hirsutum HOM05D000641 ORTHO05D000944 3.2e-12 76.6 211 37.0
Duzib041G0512 Durio zibethinus HOM05D000641 ORTHO05D000944 4.2e-12 76.3 226 35.8
Gohir.A05G208600 Gossypium hirsutum HOM05D000641 ORTHO05D000944 4.2e-12 76.3 223 35.4
Manes.18G045100 Manihot esculenta HOM05D000641 ORTHO05D000944 5.5e-12 75.9 227 37.0
MELO3C010814.2 Cucumis melo HOM05D000641 ORTHO05D000944 9.4e-12 75.1 218 37.6
TAR628G0131 Trochodendron aralioides HOM05D000641 ORTHO05D000944 2.1e-11 73.9 214 36.4
Gorai.009G218600 Gossypium raimondii HOM05D000641 ORTHO05D000944 2.7e-11 73.6 223 35.4
Nn5g30541 Nelumbo nucifera HOM05D000641 ORTHO05D000944 2.7e-11 73.6 231 37.2
Sabra14G0011400 Salix brachista HOM05D000641 ORTHO05D000944 2.7e-11 73.6 231 38.5
Thecc.08G090900 Theobroma cacao HOM05D000641 ORTHO05D000944 2.7e-11 73.6 266 33.1
Sabra02G0094100 Salix brachista HOM05D000641 ORTHO05D000944 3.6e-11 73.2 236 34.3
Duzib093G1400 Durio zibethinus HOM05D000641 ORTHO05D000944 1.0e-10 71.6 226 35.8
Gohir.D05G212000 Gossypium hirsutum HOM05D000641 ORTHO05D000944 1.0e-10 71.6 223 35.0
Gohir.D06G020500 Gossypium hirsutum HOM05D000641 ORTHO05D000944 1.0e-10 71.6 209 35.9
Actinidia27985 Actinidia chinensis HOM05D000641 ORTHO05D000944 1.4e-10 71.2 220 37.3
ClCG08G016390 Citrullus lanatus HOM05D000641 ORTHO05D000944 1.8e-10 70.9 224 36.2
MELO3C016807.2 Cucumis melo HOM05D000641 ORTHO05D000944 2.3e-10 70.5 212 38.7
CsaV3_2G026220 Cucumis sativus L. HOM05D000641 ORTHO05D000944 2.3e-10 70.5 210 36.2
Gorai.010G025000 Gossypium raimondii HOM05D000641 ORTHO05D000944 2.3e-10 70.5 211 35.5
Ciclev10000532m.g Citrus clementina HOM05D000641 ORTHO05D000944 4.0e-10 69.7 218 35.3
CiPaw.07G176500 Carya illinoinensis HOM05D000641 ORTHO05D000944 5.2e-10 69.3 217 35.9
Hma1.2p1_1023F.1_g248870 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 1.5e-09 67.8 176 37.5
Hma1.2p1_1773F.1_g301690 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 2.0e-09 67.4 218 33.9
Rhsim05G0090200 Rhododendron simsii HOM05D000641 ORTHO05D000944 2.0e-09 67.4 230 35.7
TPR.G35991 Trifolium pratense HOM05D000641 ORTHO05D000944 2.0e-09 67.4 244 31.6
ClCG05G020500 Citrullus lanatus HOM05D000641 ORTHO05D000944 2.6e-09 67.0 211 37.0
Haze_22317 Corylus avellana HOM05D000641 ORTHO05D000944 3.3e-09 66.6 218 33.5
CsaV3_4G034920 Cucumis sativus L. HOM05D000641 ORTHO05D000944 3.3e-09 66.6 229 37.1
Eucgr.F02263 Eucalyptus grandis HOM05D000641 ORTHO05D000944 3.3e-09 66.6 222 34.2
Manes.05G180700 Manihot esculenta HOM05D000641 ORTHO05D000944 5.7e-09 65.9 223 34.1
Nn1g04601 Nelumbo nucifera HOM05D000641 ORTHO05D000944 7.5e-09 65.5 219 34.2
RcHm_v2.0_Chr4g0405481 Rosa chinensis HOM05D000641 ORTHO05D000944 7.5e-09 65.5 185 33.0
TWI12G0182 Tripterygium wilfordii HOM05D000641 ORTHO05D000944 7.5e-09 65.5 222 33.3
Psat6g016560 Pisum sativum HOM05D000641 ORTHO05D000944 1.3e-08 64.7 228 32.0
COL.COLO4_28521 Corchorus olitorius HOM05D000641 ORTHO05D000944 1.7e-08 64.3 233 33.5
TAR376G0410 Trochodendron aralioides HOM05D000641 ORTHO05D000944 1.7e-08 64.3 213 34.7
THA.LOC104801606 Tarenaya hassleriana HOM05D000641 ORTHO05D000944 2.2e-08 63.9 290 30.3
Dinv42224 Davidia involucrata HOM05D000641 ORTHO05D000944 2.8e-08 63.5 220 35.0
PGR083G1418 Punica granatum HOM05D000641 ORTHO05D000944 3.7e-08 63.2 276 32.6
TAR381G0627 Trochodendron aralioides HOM05D000641 ORTHO05D000944 4.8e-08 62.8 218 36.2
Atru.chr13.814 Acer truncatum HOM05D000641 ORTHO05D000944 8.2e-08 62.0 241 34.4
Lj4C69T11 Lonicera japonica HOM05D000641 ORTHO05D000944 1.1e-07 61.6 216 35.6
vmacro19528 Vaccinium macrocarpon HOM05D000641 ORTHO05D000944 1.4e-07 61.2 231 35.1
Prupe.8G142000 Prunus persica HOM05D000641 ORTHO05D000944 1.8e-07 60.8 240 31.2
PGR031G0418 Punica granatum HOM05D000641 ORTHO05D000944 1.8e-07 60.8 203 35.5
CSS0009467 Camellia sinensis var. sinensis HOM05D000641 ORTHO05D000944 4.1e-07 59.7 215 33.5
DCAR_012812 Daucus carota HOM05D000641 ORTHO05D000944 5.3e-07 59.3 247 36.8
GSVIVG01037854001 Vitis vinifera HOM05D000641 ORTHO05D000944 5.3e-07 59.3 194 34.5
TWI12G0257 Tripterygium wilfordii HOM05D000641 ORTHO05D000944 7.0e-07 58.9 217 35.0
MBI16_g02951_MAGBIO Magnolia biondii HOM05D000641 ORTHO05D000944 9.1e-07 58.5 171 38.0
Ca_13234_v3 Cicer arietinum L. HOM05D000641 ORTHO05D000944 1.2e-06 58.2 231 32.0
Dinv44969 Davidia involucrata HOM05D000641 ORTHO05D000944 1.2e-06 58.2 288 33.0
CiPaw.06G166700 Carya illinoinensis HOM05D000641 ORTHO05D000944 2.0e-06 57.4 246 31.7
MD10G1103300 Malus domestica HOM05D000641 ORTHO05D000944 4.5e-06 56.2 222 31.1
QL12p037658 Quercus lobata HOM05D000641 ORTHO05D000944 4.5e-06 56.2 228 31.1
Actinidia22684 Actinidia chinensis HOM05D000641 ORTHO05D000944 5.9e-06 55.8 191 36.1
Dinv39248 Davidia involucrata HOM05D000641 ORTHO05D000944 7.7e-06 55.5 222 36.9


User provided reference genes

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