Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 3.2e-66 255.0 132 100.0
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 3.2e-66 255.0 132 100.0
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 2.1e-62 242.3 132 97.0
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 9.9e-60 233.4 132 92.4
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 8.4e-59 230.3 130 92.3
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 2.3e-56 222.2 133 88.7
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 2.3e-56 222.2 133 88.7
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 2.8e-54 215.3 130 88.5
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 8.1e-54 213.8 126 88.1
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 1.3e-48 196.4 132 78.8
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 2.3e-48 195.7 131 77.1
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 3.9e-48 194.9 132 78.8
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 1.3e-43 179.9 136 73.5
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 6.0e-41 171.0 134 70.1
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 3.4e-36 155.2 128 63.3
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 2.9e-35 152.1 128 66.4
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 5.0e-35 151.4 134 64.9
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 5.0e-35 151.4 131 63.4
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 5.0e-35 151.4 131 63.4
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 8.5e-35 150.6 132 65.2
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.4e-34 149.8 119 65.5
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 1.9e-34 149.4 131 63.4
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 3.2e-34 148.7 132 62.9
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 4.2e-34 148.3 129 64.3
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 4.2e-34 148.3 133 63.9
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 4.2e-34 148.3 133 63.2
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 7.2e-34 147.5 131 63.4
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 9.3e-34 147.1 128 62.5
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 1.2e-33 146.7 130 65.4
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 2.1e-33 146.0 124 63.7
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 2.7e-33 145.6 138 58.7
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.6e-33 145.2 134 61.9
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 6.1e-33 144.4 130 64.6
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 6.1e-33 144.4 130 64.6
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 1.3e-32 143.3 127 64.6
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 1.3e-32 143.3 128 61.7
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 1.8e-32 142.9 130 60.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 2.3e-32 142.5 121 62.8
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 3.0e-32 142.1 130 60.8
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 5.1e-32 141.4 121 62.8
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 6.7e-32 141.0 124 61.3
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 8.7e-32 140.6 137 59.9
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 8.7e-32 140.6 129 61.2
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 8.7e-32 140.6 121 63.6
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 1.5e-31 139.8 136 59.6
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 1.9e-31 139.4 116 64.7
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.5e-31 139.0 121 60.3
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 3.3e-31 138.7 128 60.2
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 5.7e-31 137.9 137 57.7
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 7.4e-31 137.5 121 59.5
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 9.7e-31 137.1 135 60.0
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 2.2e-30 136.0 133 58.6
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 2.2e-30 136.0 128 60.9
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 3.7e-30 135.2 128 59.4
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 3.7e-30 135.2 127 58.3
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 4.8e-30 134.8 130 62.3
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 6.3e-30 134.4 129 61.2
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 1.4e-29 133.3 129 61.2
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 1.4e-29 133.3 129 62.0
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.4e-29 133.3 128 60.9
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 1.8e-29 132.9 136 57.4
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 2.4e-29 132.5 121 61.2
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 2.4e-29 132.5 122 59.0
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.4e-29 132.5 114 62.3
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 4.1e-29 131.7 127 55.9
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 4.1e-29 131.7 131 58.8
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 5.3e-29 131.3 133 56.4
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 5.3e-29 131.3 133 54.9
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 9.1e-29 130.6 104 63.5
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.2e-28 130.2 129 56.6
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 3.4e-28 128.6 135 54.8
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.4e-28 128.6 123 58.5
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.5e-28 128.3 123 58.5
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.3e-27 126.7 124 60.5
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.7e-27 126.3 129 55.0
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 3.8e-27 125.2 138 54.3
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 8.5e-27 124.0 131 51.9
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 1.1e-26 123.6 127 55.9
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.4e-26 123.2 120 60.0
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.4e-26 123.2 130 56.2
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 2.5e-26 122.5 129 54.3
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 4.2e-26 121.7 130 55.4
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.2e-25 120.2 123 57.7
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.6e-25 119.8 105 61.9
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 2.1e-25 119.4 105 63.8
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 6.1e-25 117.9 106 57.5
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 7.9e-25 117.5 104 59.6
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 1.0e-24 117.1 94 66.0
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 2.3e-24 115.9 110 57.3
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 1.1e-23 113.6 121 52.1
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 1.5e-23 113.2 122 52.5
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 5.7e-23 111.3 127 48.8
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 3.1e-21 105.5 126 49.2
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 3.4e-20 102.1 115 51.3
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.3e-19 100.1 93 54.8
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 4.2e-18 95.1 130 45.4
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 4.4e-15 85.1 118 42.4
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 5.5e-10 68.2 82 41.5
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.1e-09 66.2 41 73.2
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.7e-07 58.2 66 43.9
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.7e-07 58.2 66 43.9
HPP92_002807 Vanilla planifolia HOM05D007500 ORTHO05D009197 2.8e-06 55.8 75 46.7
CAN.G65.47 Capsicum annuum HOM05D000789 ORTHO05D000897 6.3e-06 54.7 79 36.7
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 8.2e-06 54.3 77 40.3


User provided reference genes

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