Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 6.1e-106 387.5 196 100.0
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 9.7e-104 380.2 196 98.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 2.2e-103 379.0 196 97.4
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.4e-89 333.2 196 86.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 2.5e-83 312.4 196 80.1
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 5.6e-83 311.2 196 79.6
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 5.2e-81 304.7 196 79.1
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 6.8e-81 304.3 196 77.6
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.6e-74 283.1 193 76.2
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 2.6e-72 275.8 196 71.4
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 5.1e-60 235.0 197 62.9
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.3e-59 232.3 197 59.4
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 4.7e-58 228.4 197 56.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 4.4e-56 221.9 197 56.9
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 2.2e-55 219.5 198 57.6
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 3.8e-55 218.8 197 56.9
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.1e-54 217.2 197 55.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.1e-54 217.2 197 54.3
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.4e-54 216.9 197 55.8
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.9e-54 216.5 203 55.2
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 3.2e-54 215.7 197 56.9
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 3.2e-54 215.7 198 55.6
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 7.1e-54 214.5 199 53.8
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 2.7e-53 212.6 197 52.8
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 4.6e-53 211.8 199 54.3
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.0e-52 210.7 203 53.7
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 1.3e-52 210.3 197 53.8
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.3e-52 209.5 200 54.0
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 3.0e-52 209.1 200 53.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 3.9e-52 208.8 200 55.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.9e-52 208.8 198 54.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 3.9e-52 208.8 198 54.0
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 6.6e-52 208.0 196 56.1
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.5e-51 206.8 198 55.1
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 2.5e-51 206.1 197 54.8
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 2.5e-51 206.1 184 57.1
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 5.6e-51 204.9 196 52.6
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 7.3e-51 204.5 197 51.3
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 9.6e-51 204.1 205 54.6
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.6e-50 203.4 200 52.5
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 4.7e-50 201.8 197 51.3
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.2e-50 201.4 200 52.5
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.1e-49 200.7 198 52.5
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 1.4e-49 200.3 185 56.2
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 3.1e-49 199.1 198 52.0
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 5.3e-49 198.4 198 53.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.6e-48 196.1 198 51.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.8e-48 194.9 198 51.5
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 7.6e-48 194.5 197 49.7
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 9.9e-48 194.1 198 51.5
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.7e-47 193.4 198 52.5
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.2e-47 193.0 198 49.5
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.2e-46 188.7 184 53.8
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.2e-46 188.7 185 51.4
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 4.2e-46 188.7 198 50.5
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 7.1e-46 188.0 198 48.5
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.6e-45 186.8 187 49.7
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.1e-45 186.4 187 49.2
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.7e-45 186.0 236 42.4
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 3.5e-45 185.7 199 47.2
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.7e-44 183.3 197 49.7
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 3.9e-44 182.2 184 52.2
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 6.6e-44 181.4 154 58.4
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 8.7e-44 181.0 196 46.9
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.1e-43 180.6 197 47.7
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.1e-43 180.6 197 47.2
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.9e-43 179.9 196 46.4
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.5e-43 179.5 167 54.5
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.6e-43 178.3 190 50.0
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.6e-42 176.8 195 48.2
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.8e-42 176.0 199 46.7
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 2.8e-42 176.0 199 47.7
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.8e-42 176.0 206 47.1
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.8e-42 176.0 197 47.2
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 3.6e-42 175.6 197 48.2
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 8.1e-42 174.5 199 45.7
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.1e-41 174.1 184 46.7
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 9.9e-40 167.5 199 45.7
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 9.9e-40 167.5 199 45.2
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.2e-39 166.4 184 47.8
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 2.2e-39 166.4 179 49.7
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.9e-39 166.0 184 46.7
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 5.4e-38 161.8 202 44.1
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.2e-37 160.6 196 43.4
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 1.2e-37 160.6 202 44.1
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 2.1e-37 159.8 204 42.6
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 6.0e-37 158.3 163 49.7
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.3e-36 157.1 184 41.8
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.8e-36 156.8 160 48.8
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.1e-36 155.2 232 39.7
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 9.6e-35 151.0 184 43.5
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 6.9e-33 144.8 197 41.1
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.4e-32 142.5 176 45.5
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 3.8e-31 139.0 162 46.9
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 3.2e-30 136.0 144 51.4
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 9.3e-30 134.4 186 41.4
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.2e-29 134.0 199 39.2
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 2.1e-29 133.3 182 41.8
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 2.1e-29 133.3 145 46.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.3e-28 130.6 182 37.9
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.9e-27 126.7 139 47.5
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.3e-26 124.0 115 59.1
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 8.2e-26 121.3 146 45.2
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 6.9e-25 118.2 144 43.8
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.6e-24 116.3 111 51.4
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 4.5e-24 115.5 145 42.1
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 8.4e-23 111.3 155 38.7
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.2e-22 109.4 128 41.4
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.0e-21 105.1 101 57.4
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 7.9e-21 104.8 116 47.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.1e-19 100.9 84 58.3
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 7.4e-19 98.2 129 42.6
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.8e-17 93.6 157 38.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.2e-16 90.9 87 55.2
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.3e-15 87.4 184 29.3
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 4.2e-14 82.4 81 48.1
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.8e-12 77.0 84 44.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 2.3e-12 76.6 105 37.1
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.1e-09 67.8 45 71.1
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 6.9e-09 65.1 61 50.8
BcaC04g21903 Brassica carinata HOM05D006640 ORTHO05D008078 1.2e-08 64.3 46 69.6
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 3.4e-08 62.8 189 25.4
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.4e-06 57.4 56 53.6


User provided reference genes

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