Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34613 Brassica carinata HOM05D003657 ORTHO05D004286 1.9e-92 342.4 169 100.0
C07p26440 Brassica napus HOM05D003657 ORTHO05D004286 8.2e-75 283.9 180 83.3
BcaC03g17300 Brassica carinata HOM05D003657 ORTHO05D004286 2.2e-72 275.8 180 81.1
BolC6t40216H Brassica oleracea HOM05D003657 ORTHO05D004286 2.0e-65 252.7 179 76.5
BolC8t49013H Brassica oleracea HOM05D003657 ORTHO05D004286 1.7e-64 249.6 168 78.6
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 7.2e-63 244.2 189 69.8
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 1.5e-60 236.5 181 69.6
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 3.3e-60 235.3 190 67.9
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 3.3e-60 235.3 190 67.9
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 4.4e-60 235.0 190 67.9
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 2.2e-59 232.6 188 69.1
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.4e-58 229.9 189 65.1
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 7.0e-58 227.6 189 64.0
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 1.3e-56 223.4 189 62.4
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 6.5e-56 221.1 181 67.4
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 8.5e-56 220.7 213 60.1
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 9.4e-55 217.2 225 57.3
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 8.0e-54 214.2 183 63.4
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 3.3e-52 208.8 189 58.7
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 7.0e-50 201.1 189 57.7
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 2.0e-49 199.5 181 64.1
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 2.7e-49 199.1 192 55.7
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.4e-45 186.8 184 56.5
BolC4t22251H Brassica oleracea HOM05D003657 ORTHO05D004286 4.4e-44 181.8 116 77.6
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.2e-41 173.7 185 53.5
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 1.2e-41 173.7 186 53.2
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 7.2e-39 164.5 189 48.1
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 2.8e-38 162.5 170 52.9
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 1.8e-37 159.8 187 48.7
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 6.8e-37 157.9 183 49.7
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.8e-37 157.9 182 49.5
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.5e-36 156.8 185 48.1
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.6e-36 156.0 186 48.9
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 3.4e-36 155.6 190 47.9
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 7.5e-36 154.5 187 48.1
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 9.8e-36 154.1 181 49.2
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 9.8e-36 154.1 189 47.1
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 1.3e-35 153.7 182 51.6
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.3e-35 153.7 189 47.6
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 1.7e-35 153.3 181 51.9
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 2.2e-35 152.9 185 47.0
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 1.1e-34 150.6 178 49.4
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.1e-34 150.6 186 44.6
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 1.4e-34 150.2 182 50.5
Lj2A1080T42 Lonicera japonica HOM05D003657 ORTHO05D004286 1.8e-34 149.8 189 44.4
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 2.4e-34 149.4 190 46.8
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 2.4e-34 149.4 181 49.2
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 5.4e-34 148.3 185 45.4
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 7.0e-34 147.9 178 47.2
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 1.2e-33 147.1 182 50.0
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 1.6e-33 146.7 188 44.1
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 1.6e-33 146.7 178 47.8
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 2.7e-33 146.0 190 45.3
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 4.5e-33 145.2 182 50.0
BolC5t29306H Brassica oleracea HOM05D003657 ORTHO05D004286 4.5e-33 145.2 182 50.0
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 5.9e-33 144.8 188 43.6
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 7.8e-33 144.4 186 44.1
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 1.0e-32 144.1 189 44.4
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.7e-32 143.3 151 52.3
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.9e-32 142.5 151 51.7
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.9e-32 142.5 151 51.7
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 3.9e-32 142.1 176 47.7
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 3.9e-32 142.1 189 44.4
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 5.0e-32 141.7 178 50.6
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 8.6e-32 141.0 190 45.8
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 1.5e-31 140.2 186 44.6
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.9e-31 139.8 186 42.5
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 2.5e-31 139.4 187 43.3
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 2.5e-31 139.4 194 42.8
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 3.3e-31 139.0 186 43.0
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 3.3e-31 139.0 186 44.1
Psat5g159760 Pisum sativum HOM05D003657 ORTHO05D004286 7.3e-31 137.9 177 45.2
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 7.3e-31 137.9 188 44.1
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 9.5e-31 137.5 179 43.0
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 1.6e-30 136.7 176 46.6
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 2.8e-30 136.0 188 45.2
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 2.8e-30 136.0 187 43.3
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 3.6e-30 135.6 185 43.8
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 6.1e-30 134.8 188 39.4
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 8.0e-30 134.4 181 44.8
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 8.0e-30 134.4 175 44.0
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 1.0e-29 134.0 190 43.7
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 1.0e-29 134.0 185 45.4
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 1.4e-29 133.7 181 43.6
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 1.8e-29 133.3 179 41.9
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 2.3e-29 132.9 185 44.3
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 2.3e-29 132.9 181 44.2
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 4.0e-29 132.1 180 43.9
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 4.0e-29 132.1 184 44.0
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 5.2e-29 131.7 180 42.8
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 6.8e-29 131.3 189 40.7
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 6.8e-29 131.3 188 41.0
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 8.9e-29 131.0 183 45.4
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 8.9e-29 131.0 187 43.9
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 1.5e-28 130.2 181 42.5
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 2.6e-28 129.4 177 43.5
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 3.4e-28 129.0 183 45.9
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 3.4e-28 129.0 139 47.5
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 3.4e-28 129.0 182 42.9
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 4.4e-28 128.6 228 37.3
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 5.8e-28 128.3 175 42.3
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 9.8e-28 127.5 178 43.8
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 1.7e-27 126.7 184 43.5
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 2.9e-27 125.9 181 42.0
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 2.9e-27 125.9 145 46.9
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 6.4e-27 124.8 145 49.0
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 6.4e-27 124.8 151 45.7
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.9e-26 123.2 185 45.4
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 1.9e-26 123.2 201 40.3
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 4.1e-26 122.1 137 52.6
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 5.4e-26 121.7 186 44.1
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 9.2e-26 120.9 165 43.0
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.2e-25 120.6 146 49.3
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 1.2e-25 120.6 155 45.8
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 2.0e-25 119.8 137 52.6
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 2.0e-25 119.8 189 41.8
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 3.5e-25 119.0 144 45.1
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 4.6e-25 118.6 196 42.3
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 4.6e-25 118.6 216 37.0
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 6.0e-25 118.2 190 39.5
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 7.8e-25 117.9 196 42.3
RcHm_v2.0_Chr2g0157131 Rosa chinensis HOM05D003657 ORTHO05D004286 7.8e-25 117.9 134 51.5
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 7.8e-25 117.9 174 40.2
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 1.3e-24 117.1 193 41.5
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.9e-24 115.5 167 44.3
SEGI_37644 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 1.1e-23 114.0 174 39.7
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 1.9e-23 113.2 136 49.3
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 3.3e-23 112.5 187 39.0
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.3e-23 112.5 167 43.7
Ca_30683_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 7.3e-23 111.3 176 40.9
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 7.3e-23 111.3 152 40.8
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 9.5e-23 110.9 174 39.1
Lj4A394T19 Lonicera japonica HOM05D003657 ORTHO05D004286 1.2e-22 110.5 134 44.0
Lj4C400T2 Lonicera japonica HOM05D003657 ORTHO05D004286 1.2e-22 110.5 134 44.0
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 2.1e-22 109.8 237 33.8
QL08p039443 Quercus lobata HOM05D003657 ORTHO05D004286 6.2e-22 108.2 96 57.3
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 8.0e-22 107.8 142 45.8
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 8.0e-22 107.8 140 44.3
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 8.0e-22 107.8 144 43.1
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 2.3e-21 106.3 188 38.8
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 6.8e-21 104.8 146 44.5
MSTRG.22974 Avicennia marina HOM05D003657 ORTHO05D004286 4.4e-20 102.1 96 55.2
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 6.0e-17 91.7 132 39.4
CARHR217910 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.2e-14 84.0 93 55.9
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 4.7e-14 82.0 162 35.2
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 1.2e-12 77.4 121 34.7
CARHR035590 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.2e-12 77.4 94 52.1
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 4.4e-12 75.5 135 34.1
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 3.7e-11 72.4 130 35.4
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 1.4e-10 70.5 120 39.2
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 5.4e-10 68.6 77 46.8
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 1.6e-09 67.0 115 33.9
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 2.7e-09 66.2 115 32.2
BcaC02g12221 Brassica carinata HOM05D003657 ORTHO05D004286 8.6e-08 61.2 75 50.7
Lsat_1_v5_gn_7_93181 Lactuca sativa HOM05D003657 ORTHO05D004286 2.5e-07 59.7 35 71.4


User provided reference genes

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