Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34541 Brassica carinata HOM05D009819 ORTHO05D011938 4.9e-58 227.6 118 100.0
C07p27410 Brassica napus HOM05D009819 ORTHO05D011938 1.4e-57 226.1 118 99.2
BolC7t43271H Brassica oleracea HOM05D009819 ORTHO05D011938 4.1e-57 224.6 118 98.3
A06p47110 Brassica napus HOM05D009819 ORTHO05D011938 1.2e-51 206.5 118 90.7
BraA06t27583Z Brassica rapa HOM05D009819 ORTHO05D011938 1.2e-51 206.5 118 90.7
BcaC06g31608 Brassica carinata HOM05D009819 ORTHO05D011938 6.4e-50 200.7 118 89.0
Sp2g09330 Schrenkiella parvula HOM05D009819 ORTHO05D011938 3.2e-41 171.8 118 77.1
A09p21160 Brassica napus HOM05D009819 ORTHO05D011938 2.7e-40 168.7 120 74.2
BraA09t37722Z Brassica rapa HOM05D009819 ORTHO05D011938 2.7e-40 168.7 120 74.2
Thhalv10001188m.g Eutrema salsugineum HOM05D009819 ORTHO05D011938 6.0e-40 167.5 118 76.3
A02p28450 Brassica napus HOM05D009819 ORTHO05D011938 1.7e-39 166.0 118 73.7
BraA02t07880Z Brassica rapa HOM05D009819 ORTHO05D011938 1.7e-39 166.0 118 73.7
BcaB07g30520 Brassica carinata HOM05D009819 ORTHO05D011938 2.3e-39 165.6 119 75.6
BcaC04g21826 Brassica carinata HOM05D009819 ORTHO05D011938 6.6e-39 164.1 121 74.4
C09p26990 Brassica napus HOM05D009819 ORTHO05D011938 6.6e-39 164.1 121 74.4
BolC9t55582H Brassica oleracea HOM05D009819 ORTHO05D011938 6.6e-39 164.1 121 74.4
BcaB07g30942 Brassica carinata HOM05D009819 ORTHO05D011938 5.6e-38 161.0 120 74.2
CARHR178570 Cardamine hirsuta HOM05D009819 ORTHO05D011938 9.5e-38 160.2 120 75.0
AT5G44540 Arabidopsis thaliana HOM05D009819 ORTHO05D011938 1.4e-36 156.4 121 74.4
BolC2t10545H Brassica oleracea HOM05D009819 ORTHO05D011938 5.8e-35 151.0 100 75.0
Carub.0008s0396 Capsella rubella HOM05D009819 ORTHO05D011938 3.2e-33 145.2 119 68.1
BcaC03g16672 Brassica carinata HOM05D009819 ORTHO05D011938 2.5e-30 135.6 94 73.4
C02p45070 Brassica napus HOM05D009819 ORTHO05D011938 2.5e-14 82.4 50 78.0
Sp7g18780 Schrenkiella parvula HOM05D010395 ORTHO05D012583 4.0e-12 75.1 91 48.4
A01p12110 Brassica napus HOM05D010395 ORTHO05D012583 1.5e-11 73.2 137 43.8
BraA01t01154Z Brassica rapa HOM05D010395 ORTHO05D012583 1.5e-11 73.2 137 43.8
BolC1t01399H Brassica oleracea HOM05D010395 ORTHO05D012583 3.4e-11 72.0 132 44.7
CARHR227250 Cardamine hirsuta HOM05D010395 ORTHO05D012583 3.4e-11 72.0 137 36.5
C01p14420 Brassica napus HOM05D010395 ORTHO05D012583 7.6e-11 70.9 126 43.7
Aa31LG9G8670 Aethionema arabicum HOM05D009819 ORTHO05D011938 9.9e-11 70.5 120 42.5
BcaB03g11673 Brassica carinata HOM05D010395 ORTHO05D012583 9.9e-11 70.5 138 40.6
AL7G33470 Arabidopsis lyrata HOM05D010395 ORTHO05D012583 1.3e-10 70.1 93 45.2
A08p14880 Brassica napus HOM05D010395 ORTHO05D012583 1.3e-10 70.1 90 46.7
BraA08t33471Z Brassica rapa HOM05D010395 ORTHO05D012583 1.3e-10 70.1 90 46.7
AL7G33450 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.2e-10 69.3 93 45.2
THA.LOC104812932 Tarenaya hassleriana HOM05D009819 ORTHO05D011938 2.2e-10 69.3 78 51.3
BcaC01g00670 Brassica carinata HOM05D010395 ORTHO05D012583 2.9e-10 68.9 130 39.2
C03p82940 Brassica napus HOM05D010395 ORTHO05D012583 2.9e-10 68.9 130 39.2
BolC3t20577H Brassica oleracea HOM05D010395 ORTHO05D012583 2.9e-10 68.9 130 39.2
Carub.0007s2074 Capsella rubella HOM05D010395 ORTHO05D012583 6.4e-10 67.8 134 35.8
AT4G20420 Arabidopsis thaliana HOM05D010395 ORTHO05D012583 9.3e-09 63.9 136 39.0
THA.LOC104806242 Tarenaya hassleriana HOM05D009819 ORTHO05D011938 5.6e-06 54.7 50 48.0


User provided reference genes

Program Settings