Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34473 Brassica carinata HOM05D003545 ORTHO05D032500 7.8e-20 100.1 79 100.0
BolC7t43342H Brassica oleracea HOM05D003545 ORTHO05D032500 3.9e-19 97.8 78 100.0
C07p11630 Brassica napus HOM05D003545 ORTHO05D032500 5.3e-16 87.4 79 94.9
BcaC01g00762 Brassica carinata HOM05D000171 ORTHO05D000101 5.8e-15 84.0 79 92.4
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 1.4e-13 79.3 76 76.3
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 7.1e-13 77.0 76 75.0
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 7.1e-13 77.0 78 79.5
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 7.1e-13 77.0 78 79.5
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 7.1e-13 77.0 77 83.1
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 1.2e-12 76.3 77 87.0
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 2.1e-12 75.5 78 83.3
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 2.7e-12 75.1 77 71.4
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 3.5e-12 74.7 77 81.8
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 7.9e-12 73.6 77 81.8
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 1.3e-11 72.8 77 81.8
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 1.3e-11 72.8 84 77.4
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 1.3e-11 72.8 77 81.8
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 1.8e-11 72.4 85 76.5
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 3.0e-11 71.6 78 85.9
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 3.0e-11 71.6 81 81.5
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 3.0e-11 71.6 78 85.9
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 3.0e-11 71.6 78 85.9
BcaC06g35725 Brassica carinata HOM05D003245 ORTHO05D017662 3.9e-11 71.2 68 92.6
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 1.1e-10 69.7 77 77.9
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-10 69.3 77 84.4
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 4.3e-10 67.8 81 80.2
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 4.3e-10 67.8 81 80.2
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.6e-09 65.9 76 81.6
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 2.8e-09 65.1 80 78.8
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 2.8e-09 65.1 31 90.3
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 4.8e-09 64.3 80 78.8
BcaB05g24664 Brassica carinata HOM05D003797 ORTHO05D004370 8.1e-09 63.5 31 87.1
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 8.1e-09 63.5 31 87.1
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 8.1e-09 63.5 31 87.1
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 1.1e-08 63.2 31 83.9
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 2.4e-08 62.0 30 83.3
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 3.1e-08 61.6 31 80.6
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 3.1e-08 61.6 31 80.6
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 3.1e-08 61.6 31 80.6
AL1G66220 Arabidopsis lyrata HOM05D003545 ORTHO05D079241 4.0e-08 61.2 67 82.1
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 4.0e-08 61.2 31 77.4
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 5.3e-08 60.8 31 77.4
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 5.3e-08 60.8 31 77.4
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 5.3e-08 60.8 31 77.4
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 6.9e-08 60.5 30 80.0
BcaC03g16226 Brassica carinata HOM05D003545 ORTHO05D011382 6.9e-08 60.5 30 83.3
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 9.0e-08 60.1 30 76.7
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 9.0e-08 60.1 31 74.2
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 9.0e-08 60.1 31 77.4
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 9.0e-08 60.1 31 77.4
SalBow3G0142 Salvia bowleyana HOM05D003545 ORTHO05D004720 9.0e-08 60.1 30 80.0
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 9.0e-08 60.1 30 80.0
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 1.2e-07 59.7 30 76.7
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 1.2e-07 59.7 30 76.7
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 1.2e-07 59.7 30 80.0
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 1.5e-07 59.3 31 77.4
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 1.5e-07 59.3 31 80.6
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.5e-07 59.3 30 83.3
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 1.5e-07 59.3 30 80.0
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.5e-07 59.3 77 70.1
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 1.5e-07 59.3 31 77.4
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 2.0e-07 58.9 31 77.4
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 2.0e-07 58.9 30 76.7
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 2.0e-07 58.9 30 76.7
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 2.0e-07 58.9 31 74.2
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 2.0e-07 58.9 30 76.7
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 2.0e-07 58.9 31 74.2
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 2.0e-07 58.9 31 74.2
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 2.0e-07 58.9 30 76.7
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 2.6e-07 58.5 31 77.4
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 2.6e-07 58.5 30 73.3
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 2.6e-07 58.5 30 76.7
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 2.6e-07 58.5 31 74.2
QL02p098432 Quercus lobata HOM05D003545 ORTHO05D004720 2.6e-07 58.5 31 74.2
AL1G53080 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 3.4e-07 58.2 30 76.7
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 3.4e-07 58.2 31 74.2
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 73.3
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 73.3
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 73.3
A02p20960 Brassica napus HOM05D003545 ORTHO05D031779 4.5e-07 57.8 30 80.0
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 73.3
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 73.3
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 4.5e-07 57.8 31 71.0
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 76.7
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 4.5e-07 57.8 30 73.3
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 76.7
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 73.3
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 73.3
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 76.7
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 73.3
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 76.7
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 73.3
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 5.8e-07 57.4 30 76.7
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 7.6e-07 57.0 30 73.3
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 7.6e-07 57.0 30 73.3
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 7.6e-07 57.0 29 72.4
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 7.6e-07 57.0 30 76.7
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 7.6e-07 57.0 29 79.3
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 7.6e-07 57.0 30 76.7
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 7.6e-07 57.0 30 76.7
unitig_747.g21724 Utricularia gibba HOM05D003545 ORTHO05D004720 7.6e-07 57.0 31 71.0
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 9.9e-07 56.6 30 73.3
BcaC04g21064 Brassica carinata HOM05D003545 ORTHO05D000065 9.9e-07 56.6 30 83.3
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 9.9e-07 56.6 30 76.7
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 9.9e-07 56.6 30 76.7
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 9.9e-07 56.6 29 79.3
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 9.9e-07 56.6 29 79.3
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 9.9e-07 56.6 29 75.9
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 9.9e-07 56.6 30 73.3
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 1.3e-06 56.2 30 73.3
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 1.7e-06 55.8 30 73.3
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 1.7e-06 55.8 30 76.7
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 1.7e-06 55.8 29 75.9
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 1.7e-06 55.8 31 71.0
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 2.2e-06 55.5 81 67.9
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 2.2e-06 55.5 30 70.0
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 2.2e-06 55.5 30 73.3
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 2.2e-06 55.5 30 73.3
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 2.2e-06 55.5 30 73.3
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 2.2e-06 55.5 30 70.0
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 2.9e-06 55.1 30 70.0
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 2.9e-06 55.1 29 69.0
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 2.9e-06 55.1 30 73.3
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 3.8e-06 54.7 30 70.0
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 3.8e-06 54.7 30 73.3
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 4.9e-06 54.3 28 78.6
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 4.9e-06 54.3 28 75.0
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 4.9e-06 54.3 28 75.0
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 6.4e-06 53.9 30 70.0
CiPaw.06G144300 Carya illinoinensis HOM05D003545 ORTHO05D004720 6.4e-06 53.9 31 74.2
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 6.4e-06 53.9 31 64.5
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 6.4e-06 53.9 29 72.4
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 8.4e-06 53.5 29 72.4


User provided reference genes

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