Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 5.1e-87 324.3 159 100.0
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 5.1e-87 324.3 159 100.0
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 2.4e-84 315.5 163 96.9
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 6.5e-82 307.4 164 95.1
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 6.5e-82 307.4 164 95.1
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 3.1e-76 288.5 166 89.2
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 3.2e-73 278.5 175 82.9
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 1.2e-72 276.6 171 81.9
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 1.5e-70 269.6 173 80.9
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 3.4e-70 268.5 172 83.1
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 5.4e-68 261.2 175 78.3
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 7.7e-67 257.3 172 77.9
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 1.7e-66 256.1 170 78.8
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 3.8e-66 255.0 164 80.5
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 5.0e-66 254.6 164 80.5
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 5.0e-66 254.6 164 80.5
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 2.9e-58 228.8 179 68.2
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 1.6e-51 206.5 159 71.1
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 1.6e-51 206.5 159 71.1
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 4.0e-39 165.2 179 55.9
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 1.7e-37 159.8 178 55.1
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 2.2e-37 159.5 168 56.5
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.1e-36 157.1 178 52.2
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 2.4e-36 156.0 165 52.1
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 4.1e-36 155.2 168 54.8
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 5.4e-36 154.8 168 54.8
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 1.6e-35 153.3 176 52.3
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 1.6e-35 153.3 174 53.4
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 2.7e-35 152.5 161 53.4
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 3.5e-35 152.1 170 54.1
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 1.0e-34 150.6 185 50.8
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 1.3e-34 150.2 170 51.2
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 1.7e-34 149.8 184 52.2
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 2.3e-34 149.4 168 51.8
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 3.9e-34 148.7 170 55.3
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 1.5e-33 146.7 166 52.4
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 1.5e-33 146.7 168 51.2
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 3.3e-33 145.6 166 50.6
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 7.3e-33 144.4 170 51.2
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 9.5e-33 144.1 177 51.4
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 9.5e-33 144.1 170 54.1
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 1.2e-32 143.7 178 51.1
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 1.6e-32 143.3 172 52.9
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 6.2e-32 141.4 178 47.2
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 8.1e-32 141.0 144 56.9
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 1.1e-31 140.6 172 50.0
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.8e-31 139.8 173 49.7
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 2.3e-31 139.4 161 53.4
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 3.1e-31 139.0 172 50.6
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 4.0e-31 138.7 169 49.7
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 6.8e-31 137.9 176 50.6
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 6.8e-31 137.9 176 50.6
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 6.8e-31 137.9 220 43.2
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 1.5e-30 136.7 170 48.8
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 2.0e-30 136.3 96 72.9
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 2.6e-30 136.0 175 49.1
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 4.4e-30 135.2 161 52.8
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 9.9e-30 134.0 168 49.4
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 9.9e-30 134.0 140 56.4
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 1.7e-29 133.3 161 51.6
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 2.2e-29 132.9 172 51.2
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 2.2e-29 132.9 171 46.8
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 2.2e-29 132.9 161 51.6
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 6.4e-29 131.3 180 46.7
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 1.1e-28 130.6 167 52.1
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 2.4e-28 129.4 173 48.0
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 3.2e-28 129.0 173 45.1
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 9.2e-28 127.5 174 47.7
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 1.0e-26 124.0 92 68.5
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 3.0e-26 122.5 96 64.6
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 6.6e-26 121.3 171 43.3
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 6.6e-26 121.3 166 49.4
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 8.6e-26 120.9 177 45.2
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.5e-25 119.4 171 46.8
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 5.6e-25 118.2 183 43.2
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 5.6e-25 118.2 166 49.4
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 7.3e-25 117.9 175 44.0
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 7.3e-25 117.9 180 43.3
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.6e-24 116.7 164 48.8
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.6e-24 116.7 164 48.8
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 2.1e-24 116.3 143 48.3
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 2.1e-24 116.3 178 42.7
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 6.2e-24 114.8 164 48.2
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 6.2e-24 114.8 174 43.7
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 1.8e-23 113.2 175 44.0
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 8.9e-23 110.9 95 63.2
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 2.6e-22 109.4 168 43.5
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 3.4e-22 109.0 81 70.4
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 3.4e-22 109.0 171 40.9
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 3.4e-22 109.0 168 44.0
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 1.1e-20 104.0 176 42.6
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 1.1e-20 104.0 107 56.1
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 1.4e-20 103.6 55 89.1
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.9e-20 103.2 136 46.3
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 4.2e-20 102.1 93 58.1
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 1.6e-19 100.1 172 40.1
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 2.1e-19 99.8 251 35.1
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 5.1e-18 95.1 72 69.4
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 2.8e-16 89.4 66 63.6
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 2.4e-15 86.3 143 39.2
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 2.4e-15 86.3 132 40.9
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 4.0e-15 85.5 111 45.0
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 4.0e-15 85.5 135 41.5
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 6.9e-15 84.7 72 59.7
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 1.2e-14 84.0 145 41.4
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 2.2e-13 79.7 151 41.1
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 1.9e-12 76.6 109 43.1
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 2.4e-12 76.3 44 81.8
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 3.2e-12 75.9 67 56.7
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 3.2e-12 75.9 145 36.6
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 6.0e-11 71.6 136 38.2
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 1.0e-10 70.9 76 48.7
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 4.8e-08 62.0 188 32.4
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 6.2e-08 61.6 71 47.9
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 1.4e-07 60.5 146 34.2


User provided reference genes

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