Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.2e-80 301.2 144 100.0
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.2e-80 301.2 144 100.0
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 4.7e-79 297.7 144 98.6
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 7.2e-72 273.9 145 92.4
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.0e-70 270.0 144 93.1
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 4.1e-67 258.1 147 86.4
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 9.1e-67 256.9 147 85.0
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-66 255.8 148 85.1
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.3e-65 253.1 148 83.8
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.9e-65 251.9 147 83.7
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.9e-65 251.9 147 83.7
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 5.0e-65 251.1 148 83.8
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.2e-64 248.1 150 83.3
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.3e-62 242.3 149 81.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.3e-60 236.5 144 80.6
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.4e-51 205.7 151 73.5
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 4.7e-47 191.4 112 82.1
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.3e-44 183.3 146 69.2
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.6e-42 176.4 154 62.3
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.5e-42 175.3 154 61.7
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.6e-42 174.9 151 62.3
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.3e-41 173.3 152 61.2
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 3.9e-41 171.8 152 61.2
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.1e-40 170.2 152 60.5
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.3e-40 168.7 152 59.9
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.3e-40 168.7 155 59.4
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.6e-39 166.4 152 59.2
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.4e-37 158.3 153 58.8
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.2e-36 156.0 153 56.9
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.9e-36 155.6 153 58.2
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.7e-36 155.2 154 56.5
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.5e-34 148.7 139 56.8
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.2e-29 133.7 157 47.8
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.5e-29 133.3 154 48.1
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 2.0e-29 132.9 151 49.7
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.3e-28 130.2 152 48.7
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 6.4e-28 127.9 153 50.3
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.2e-26 123.6 156 46.2
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 7.8e-26 120.9 153 45.8
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.7e-25 119.8 153 45.8
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 1.7e-25 119.8 154 44.2
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.0e-25 119.0 152 44.7
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 3.9e-25 118.6 153 45.1
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.1e-25 118.2 153 48.4
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.6e-25 117.9 148 47.3
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.1e-24 117.1 148 46.6
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 2.5e-24 115.9 148 45.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.5e-24 115.9 153 43.8
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.3e-24 115.5 153 43.8
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 4.3e-24 115.2 147 46.3
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 7.3e-24 114.4 151 44.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 9.6e-24 114.0 148 43.2
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.2e-23 113.6 153 43.1
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.1e-23 112.8 153 45.8
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.1e-23 112.8 153 46.4
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 6.2e-23 111.3 153 46.4
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 6.2e-23 111.3 157 42.7
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 8.1e-23 110.9 152 46.1
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.1e-22 110.5 153 46.4
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.4e-22 110.2 153 46.4
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.4e-22 109.4 149 44.3
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 6.9e-22 107.8 190 37.4
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-21 107.1 159 43.4
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.2e-21 107.1 159 44.0
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.5e-21 106.7 154 44.2
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.5e-21 106.7 154 44.2
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.5e-21 106.7 156 43.6
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.0e-21 106.3 159 44.0
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 2.6e-21 105.9 152 46.7
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 4.4e-21 105.1 152 40.1
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 4.4e-21 105.1 152 40.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 5.8e-21 104.8 154 42.2
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 5.8e-21 104.8 150 44.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 7.6e-21 104.4 158 42.4
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 7.6e-21 104.4 159 42.1
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.3e-20 103.6 155 45.2
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.7e-20 103.2 154 42.2
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.7e-20 103.2 156 42.9
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.9e-20 102.4 151 41.7
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 3.8e-20 102.1 154 42.2
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 4.9e-20 101.7 153 44.4
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 4.9e-20 101.7 152 40.8
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 6.4e-20 101.3 152 43.4
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 8.4e-20 100.9 157 40.8
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.4e-20 100.9 155 40.0
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.9e-19 99.8 152 41.4
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.4e-19 99.4 161 40.4
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 4.2e-19 98.6 154 39.6
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.2e-19 98.6 153 41.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 5.4e-19 98.2 154 39.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 9.3e-19 97.4 152 41.4
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.2e-18 97.1 152 42.8
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.6e-18 96.7 153 41.2
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.1e-18 96.3 153 39.9
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.7e-18 95.9 155 41.3
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 4.6e-18 95.1 109 46.8
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 7.8e-18 94.4 104 42.3
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.0e-17 94.0 99 46.5
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.7e-17 93.2 154 38.3
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.7e-17 93.2 152 40.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.7e-17 93.2 153 38.6
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.3e-17 92.8 148 41.2
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.0e-17 92.4 155 39.4
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.0e-17 92.4 110 46.4
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.9e-17 92.0 153 38.6
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 5.1e-17 91.7 157 40.1
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 5.1e-17 91.7 155 38.1
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 6.6e-17 91.3 110 47.3
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 6.6e-17 91.3 110 48.2
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.5e-16 90.1 110 45.5
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.5e-16 90.1 150 40.0
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.3e-16 89.0 154 37.7
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.3e-16 89.0 154 37.7
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 7.3e-16 87.8 132 40.2
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 9.6e-16 87.4 161 36.6
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.3e-15 87.0 155 38.7
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.3e-15 87.0 178 33.7
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.3e-15 87.0 152 38.2
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.6e-15 86.7 213 31.9
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 2.1e-15 86.3 105 44.8
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.8e-15 85.9 154 38.3
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 3.6e-15 85.5 231 29.9
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 6.2e-15 84.7 152 35.5
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 6.2e-15 84.7 153 35.9
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 6.2e-15 84.7 254 28.7
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 8.1e-15 84.3 110 42.7
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 8.1e-15 84.3 179 33.0
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 8.1e-15 84.3 110 43.6
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.8e-14 83.2 152 37.5
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.8e-14 83.2 115 39.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.1e-14 82.4 149 36.9
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 5.3e-14 81.6 158 39.9
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 5.8e-13 78.2 190 32.6
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.3e-12 77.0 155 36.1
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-12 76.6 172 33.1
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.4e-11 73.6 110 40.0
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.4e-11 73.6 101 39.6
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 2.1e-10 69.7 99 40.4
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.0e-09 67.4 67 55.2
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.0e-09 67.4 148 32.4
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.3e-09 66.2 89 46.1
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 8.7e-09 64.3 110 33.6
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 8.7e-09 64.3 114 34.2
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.3e-07 60.5 68 45.6
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.6e-07 60.1 214 27.6
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 3.7e-07 58.9 86 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 8.1e-07 57.8 71 42.3
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 8.1e-07 57.8 68 44.1
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.1e-06 57.4 84 38.1
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.4e-06 57.0 90 38.9
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 1.4e-06 57.0 62 48.4
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.1e-06 55.8 84 41.7


User provided reference genes

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