Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 7.6e-95 350.5 181 100.0
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 7.6e-95 350.5 181 100.0
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 7.6e-95 350.5 181 100.0
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 3.8e-70 268.5 187 79.7
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 5.0e-70 268.1 191 76.4
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 5.0e-70 268.1 187 80.2
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 1.4e-64 250.0 187 74.3
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 4.1e-64 248.4 190 73.7
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 4.1e-64 248.4 190 73.7
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 4.1e-64 248.4 190 73.7
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 5.3e-64 248.1 188 74.5
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 3.5e-63 245.4 189 75.7
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 7.7e-63 244.2 190 75.3
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 1.0e-62 243.8 188 73.4
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 2.7e-60 235.7 193 69.9
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 8.0e-60 234.2 190 69.5
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 5.2e-59 231.5 190 73.7
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 4.7e-52 208.4 155 75.5
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 1.3e-41 173.7 133 69.2
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 6.3e-41 171.4 102 91.2
BraA09t37861Z Brassica rapa HOM05D008115 ORTHO05D010112 1.1e-32 144.1 188 53.2
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 2.3e-27 126.3 77 81.8
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 2.9e-25 119.4 134 53.0
BcaC06g31443 Brassica carinata HOM05D008115 ORTHO05D010112 4.9e-17 92.0 58 82.8
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 1.1e-16 90.9 190 39.5
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 1.4e-16 90.5 197 36.0
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 3.2e-16 89.4 198 38.9
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 2.7e-15 86.3 194 38.7
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 2.7e-15 86.3 194 38.7
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 3.9e-14 82.4 185 36.8
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 3.9e-14 82.4 198 36.4
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 5.1e-14 82.0 193 37.8
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 8.6e-14 81.3 185 36.2
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 8.6e-14 81.3 185 36.2
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 2.5e-13 79.7 190 35.8
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.6e-12 77.0 213 35.7
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 2.1e-12 76.6 185 34.6
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 3.6e-12 75.9 224 34.4
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 8.1e-12 74.7 212 33.5
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 8.1e-12 74.7 144 36.8
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 1.1e-11 74.3 194 33.5
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 1.4e-11 73.9 192 34.4
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 1.4e-11 73.9 199 33.2
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 3.1e-11 72.8 213 33.3
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 6.8e-11 71.6 204 35.3
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 8.9e-11 71.2 192 35.9
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 1.2e-10 70.9 188 33.0
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 2.0e-10 70.1 193 33.7
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 2.0e-10 70.1 193 33.7
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 5.8e-10 68.6 170 33.5
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 7.6e-10 68.2 198 33.3
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 1.7e-09 67.0 94 44.7
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 1.7e-09 67.0 82 46.3
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 4.2e-08 62.4 81 42.0
DCAR_005627 Daucus carota HOM05D001142 ORTHO05D003453 3.5e-07 59.3 209 34.0
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 7.8e-07 58.2 195 30.3
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 1.3e-06 57.4 188 30.9
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 8.7e-06 54.7 188 28.2


User provided reference genes

Program Settings