Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 6.0e-227 790.8 495 100.0
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 6.0e-227 790.8 495 100.0
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 6.7e-226 787.3 495 99.6
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.9e-220 769.2 495 97.4
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.5e-220 768.8 495 97.8
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 9.7e-209 730.3 500 92.4
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 3.5e-182 642.1 520 75.8
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 3.0e-178 629.0 525 71.4
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 5.7e-177 624.8 521 75.8
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 2.4e-175 619.4 527 72.7
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 3.1e-175 619.0 513 76.0
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 7.3e-172 607.8 513 80.7
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.2e-145 520.8 531 63.1
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 9.6e-116 421.4 543 53.0
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 7.1e-111 405.2 400 62.2
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 5.1e-109 399.1 395 61.8
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.5e-108 397.5 392 60.7
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 7.4e-108 395.2 389 59.1
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 1.8e-106 390.6 401 58.6
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 7.6e-105 385.2 498 51.0
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 7.6e-105 385.2 387 59.9
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.3e-104 384.4 388 59.8
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.8e-104 382.9 486 51.2
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 5.0e-104 382.5 393 59.0
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.6e-102 377.5 393 58.5
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 1.6e-102 377.5 392 59.2
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.6e-102 376.3 498 50.2
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 4.6e-102 375.9 395 57.7
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 8.8e-101 371.7 384 58.9
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 8.8e-101 371.7 395 56.7
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.1e-100 371.3 527 51.0
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.9e-100 370.5 397 58.2
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.9e-100 370.5 397 58.2
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 3.3e-100 369.8 395 57.5
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 3.3e-100 369.8 398 57.0
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 3.3e-100 369.8 526 51.5
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 3.3e-100 369.8 391 58.6
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 4.3e-100 369.4 389 57.8
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 9.7e-100 368.2 527 50.7
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.3e-99 367.9 398 56.3
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 2.2e-99 367.1 384 58.9
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 4.8e-99 365.9 399 56.1
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.8e-99 365.9 399 56.1
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 6.3e-99 365.5 394 57.9
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 8.2e-99 365.2 389 58.9
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.2e-99 365.2 399 55.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.4e-98 364.4 399 55.9
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 3.1e-98 363.2 401 55.6
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 4.1e-98 362.8 388 57.0
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.1e-98 362.8 394 57.6
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 6.9e-98 362.1 392 56.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.5e-97 360.9 399 55.4
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 2.6e-97 360.1 531 47.1
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.4e-97 359.8 396 55.6
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 3.4e-97 359.8 395 56.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.3e-96 357.8 394 55.6
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 3.8e-96 356.3 393 54.7
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.0e-96 355.9 398 54.8
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 6.5e-96 355.5 357 59.9
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.1e-95 354.8 394 54.3
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 1.4e-95 354.4 397 57.4
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.4e-95 354.4 406 55.7
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 2.5e-95 353.6 388 55.9
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 4.2e-95 352.8 396 54.5
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 5.5e-95 352.4 393 54.5
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.2e-95 352.1 387 56.8
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 9.4e-95 351.7 403 55.1
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 2.1e-94 350.5 388 53.9
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 2.1e-94 350.5 402 54.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.7e-94 350.1 388 55.2
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 3.6e-94 349.7 395 54.4
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.7e-94 349.4 387 56.6
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 4.7e-94 349.4 394 55.3
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.9e-94 348.6 388 56.4
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 7.9e-94 348.6 389 55.3
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 7.9e-94 348.6 479 49.1
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 1.0e-93 348.2 392 55.1
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.0e-93 348.2 386 54.7
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 5.1e-93 345.9 389 54.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 6.7e-93 345.5 411 53.5
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 6.7e-93 345.5 402 53.5
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.5e-92 344.4 417 51.8
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.7e-91 339.7 397 54.9
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 4.8e-91 339.3 387 54.3
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 8.2e-91 338.6 370 57.3
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.1e-90 338.2 501 51.9
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.4e-90 337.8 407 52.6
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 6.9e-90 335.5 396 53.8
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 6.9e-90 335.5 388 53.4
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 3.4e-89 333.2 278 62.6
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 7.7e-89 332.0 393 53.2
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.4e-87 327.8 394 52.5
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.5e-87 327.0 409 53.5
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.5e-87 327.0 409 53.1
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 2.5e-87 327.0 402 53.5
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 4.2e-87 326.2 398 51.0
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 9.4e-87 325.1 387 54.8
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.0e-85 321.6 320 57.5
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.8e-85 320.9 406 52.5
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 8.8e-85 318.5 516 42.8
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 1.5e-84 317.8 510 51.2
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 7.4e-84 315.5 393 50.6
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.9e-80 303.5 339 53.4
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 2.9e-80 303.5 378 52.1
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 6.5e-80 302.4 398 49.7
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 8.5e-80 302.0 225 68.9
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 5.5e-79 299.3 325 53.5
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.0e-77 293.5 395 48.6
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.7e-72 277.7 361 48.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.2e-71 273.5 330 51.2
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-67 261.5 515 41.2
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 3.7e-51 206.8 198 63.6
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.4e-51 206.1 142 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 3.6e-46 190.3 359 39.0
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 3.6e-46 190.3 337 41.5
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-45 188.7 133 69.9
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.4e-45 188.3 184 65.8
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.0e-44 184.5 398 36.4
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.8e-44 183.0 238 42.4
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.3e-43 181.8 320 41.6
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.9e-39 167.9 343 37.6
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 6.2e-38 162.9 215 51.6
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 1.8e-37 161.4 206 52.9
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.4e-36 156.8 107 72.0
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 5.8e-36 156.4 105 79.0
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 5.8e-36 156.4 105 79.0
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.8e-36 156.4 322 38.8
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 2.9e-35 154.1 215 49.3
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.0e-28 131.3 358 33.5
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.3e-27 128.6 249 38.6
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 2.7e-25 120.9 115 60.9
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 7.8e-17 92.8 112 48.2
BcaC08g44235 Brassica carinata HOM05D016962 ORTHO05D018713 4.3e-15 87.0 54 88.9
A09p46710 Brassica napus HOM05D016962 ORTHO05D018713 4.3e-15 87.0 54 88.9
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 4.3e-15 87.0 122 48.4
C09p30520 Brassica napus HOM05D016962 ORTHO05D018713 4.3e-15 87.0 54 88.9
BolC3t21573H Brassica oleracea HOM05D016962 ORTHO05D018713 4.3e-15 87.0 54 88.9
A04p16170 Brassica napus HOM05D016962 ORTHO05D018713 1.3e-14 85.5 54 87.0
BraA07t27824Z Brassica rapa HOM05D016962 ORTHO05D018713 1.3e-14 85.5 54 87.0
BcaC01g01512 Brassica carinata HOM05D016962 ORTHO05D018713 2.1e-14 84.7 54 87.0
BolC2t09527H Brassica oleracea HOM05D016962 ORTHO05D018713 2.1e-14 84.7 54 87.0
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 4.0e-13 80.5 214 37.4
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.3e-13 80.1 67 61.2
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 5.3e-13 80.1 393 29.3
BcaB02g06729 Brassica carinata HOM05D000297 ORTHO05D000336 2.2e-11 74.7 52 75.0
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 6.4e-11 73.2 185 39.5
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 3.5e-09 67.4 194 27.8
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 1.6e-06 58.5 209 24.9
FAN26G0896 Fragaria x ananassa HOM05D000285 ORTHO05D000241 2.1e-06 58.2 198 22.2
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 2.8e-06 57.8 205 28.3
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 3.7e-06 57.4 235 24.7
FAN28G2200 Fragaria x ananassa HOM05D000285 ORTHO05D000241 3.7e-06 57.4 198 22.2
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 3.7e-06 57.4 276 27.5
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 4.8e-06 57.0 238 24.8
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 6.2e-06 56.6 212 24.1
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 6.2e-06 56.6 218 26.1
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 6.2e-06 56.6 238 23.5
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 8.1e-06 56.2 245 25.7
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 8.1e-06 56.2 209 23.0
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 8.1e-06 56.2 214 25.2


User provided reference genes

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