Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34281 Brassica carinata HOM05D003553 ORTHO05D027688 2.0e-65 252.3 127 100.0
BcaC08g43294 Brassica carinata HOM05D003553 ORTHO05D027688 8.1e-51 203.8 140 77.9
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 8.1e-51 203.8 140 77.9
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.1e-31 140.2 103 71.8
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.1e-31 140.2 103 71.8
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.1e-31 140.2 103 71.8
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.1e-31 140.2 103 71.8
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 2.4e-31 139.0 103 70.9
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 5.5e-31 137.9 103 70.9
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 5.5e-31 137.9 103 70.9
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-30 136.7 103 69.9
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 1.2e-30 136.7 103 69.9
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 1.6e-30 136.3 103 69.9
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.1e-30 136.0 103 68.9
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 6.0e-30 134.4 103 68.9
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 7.9e-30 134.0 103 69.9
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.3e-29 133.3 103 68.0
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.8e-29 132.9 102 70.6
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.8e-29 132.9 111 62.2
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.3e-29 132.5 102 69.6
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 3.0e-29 132.1 103 68.0
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 3.0e-29 132.1 103 68.0
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 3.0e-29 132.1 103 68.0
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.1e-28 130.2 102 67.6
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.1e-28 130.2 102 67.6
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 1.5e-28 129.8 107 67.3
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 2.5e-28 129.0 102 65.7
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.5e-28 129.0 102 66.7
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 4.3e-28 128.3 102 65.7
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 5.6e-28 127.9 103 66.0
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.6e-27 126.3 102 65.7
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 4.8e-27 124.8 102 64.7
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 6.2e-27 124.4 103 65.0
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 6.2e-27 124.4 102 65.7
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 6.2e-27 124.4 102 65.7
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 6.2e-27 124.4 102 64.7
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 6.2e-27 124.4 102 65.7
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 6.2e-27 124.4 102 64.7
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 6.2e-27 124.4 102 65.7
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 8.2e-27 124.0 105 62.9
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.1e-26 123.6 103 66.0
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 1.4e-26 123.2 102 65.7
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 9.0e-26 120.6 102 64.7
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 4.9e-24 114.8 103 62.1
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.4e-23 113.2 110 53.6
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 1.4e-23 113.2 110 54.5
BolC8t48344H Brassica oleracea HOM05D003553 ORTHO05D027688 2.5e-23 112.5 94 67.0
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 4.2e-23 111.7 112 51.8
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 7.1e-23 110.9 114 50.0
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 7.1e-23 110.9 110 50.9
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 3.5e-22 108.6 102 53.9
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 4.6e-22 108.2 110 50.0
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 4.6e-22 108.2 102 53.9
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 4.6e-22 108.2 102 53.9
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 6.0e-22 107.8 110 50.0
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 7.9e-22 107.5 102 52.9
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 7.9e-22 107.5 110 50.9
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 1.0e-21 107.1 110 50.0
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 1.0e-21 107.1 115 48.7
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.3e-21 106.7 102 52.9
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 1.8e-21 106.3 110 48.2
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.3e-21 105.9 102 52.0
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 3.9e-21 105.1 111 46.8
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 3.9e-21 105.1 110 50.0
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 5.1e-21 104.8 114 48.2
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 5.1e-21 104.8 110 47.3
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 5.1e-21 104.8 111 46.8
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 6.7e-21 104.4 110 48.2
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 8.7e-21 104.0 110 47.3
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 1.1e-20 103.6 111 46.8
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 1.1e-20 103.6 110 49.1
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 1.5e-20 103.2 110 47.3
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 1.5e-20 103.2 110 47.3
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 1.5e-20 103.2 110 48.2
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 1.5e-20 103.2 110 49.1
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.9e-20 102.8 110 48.2
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.9e-20 102.8 102 51.0
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 1.9e-20 102.8 110 50.0
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 3.3e-20 102.1 110 47.3
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 3.3e-20 102.1 110 47.3
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 3.3e-20 102.1 110 47.3
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 4.3e-20 101.7 111 49.5
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 4.3e-20 101.7 110 50.0
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 7.4e-20 100.9 103 51.5
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 1.3e-19 100.1 123 47.2
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 1.3e-19 100.1 110 46.4
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 1.6e-19 99.8 102 50.0
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 2.2e-19 99.4 111 48.6
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 2.2e-19 99.4 111 46.8
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 3.7e-19 98.6 111 45.9
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 3.7e-19 98.6 102 50.0
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 6.3e-19 97.8 111 45.0
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 8.2e-19 97.4 108 50.0
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 8.2e-19 97.4 117 50.4
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 8.2e-19 97.4 123 43.9
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 8.2e-19 97.4 111 45.0
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 8.2e-19 97.4 114 49.1
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.1e-18 97.1 111 46.8
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 1.4e-18 96.7 103 48.5
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.4e-18 96.7 103 49.5
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 1.8e-18 96.3 111 44.1
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 2.4e-18 95.9 136 43.4
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 2.4e-18 95.9 111 44.1
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 4.1e-18 95.1 102 49.0
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 5.3e-18 94.7 111 45.9
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 6.9e-18 94.4 117 44.4
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 1.2e-17 93.6 102 49.0
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.5e-17 93.2 110 43.6
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.6e-17 92.4 111 45.0
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 4.5e-17 91.7 94 53.2
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 7.6e-17 90.9 110 42.7
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 1.7e-16 89.7 110 45.5
MD14G1195400 Malus domestica HOM05D003553 ORTHO05D005072 2.2e-16 89.4 110 46.4
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 3.8e-16 88.6 102 51.0
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 6.5e-16 87.8 103 46.6
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 8.5e-16 87.4 102 46.1
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 1.1e-15 87.0 115 40.9
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 1.4e-15 86.7 135 42.2
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 1.9e-15 86.3 95 47.4
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 9.4e-15 84.0 110 42.7
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 1.2e-14 83.6 102 46.1
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 1.6e-14 83.2 82 53.7
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 1.4e-13 80.1 105 46.7
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 5.7e-12 74.7 116 41.4
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 1.3e-11 73.6 108 41.7
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.7e-11 73.2 66 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 3.7e-11 72.0 100 43.0
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 1.2e-09 67.0 116 34.5
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 2.2e-08 62.8 48 56.2
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 3.8e-08 62.0 102 38.2
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.5e-07 59.3 40 80.0
C03p57060 Brassica napus HOM05D003553 ORTHO05D040806 2.7e-06 55.8 33 72.7
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 4.7e-06 55.1 46 58.7
BolC5t31102H Brassica oleracea HOM05D003553 ORTHO05D005072 7.9e-06 54.3 42 59.5


User provided reference genes

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