Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1575.5 791 100.0
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 0.0e+00 1529.6 782 98.2
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 0.0e+00 1525.8 782 97.8
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 0.0e+00 1480.3 789 94.8
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 0.0e+00 1443.3 782 93.4
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 0.0e+00 1406.7 793 88.9
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 0.0e+00 1399.8 793 87.9
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 0.0e+00 1384.8 794 87.8
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 0.0e+00 1364.4 794 86.3
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 0.0e+00 1363.2 795 86.3
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 0.0e+00 1351.3 794 85.4
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1281.9 773 85.8
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1270.8 657 95.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 0.0e+00 1186.0 760 79.1
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 0.0e+00 1089.7 795 70.1
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 1.3e-268 929.9 802 60.5
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 3.6e-266 921.8 802 60.3
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 1.7e-263 912.9 799 59.3
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 1.4e-262 909.8 803 58.2
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 1.9e-262 909.4 799 59.1
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 1.1e-259 900.2 803 57.9
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 4.7e-258 894.8 796 58.4
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 3.8e-255 885.2 802 58.6
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 8.4e-255 884.0 807 57.1
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 7.1e-254 880.9 797 57.8
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 2.3e-252 875.9 803 56.3
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 1.6e-250 869.8 807 56.3
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 9.0e-249 864.0 800 57.1
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 1.3e-244 850.1 798 53.8
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 2.3e-244 849.4 811 55.4
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 3.9e-244 848.6 805 55.8
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 8.7e-244 847.4 798 55.8
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 1.5e-243 846.7 798 55.6
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.5e-243 845.9 796 56.0
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 5.6e-243 844.7 859 52.9
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.8e-241 839.7 802 56.7
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.2e-240 837.0 798 55.6
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.2e-240 837.0 798 55.4
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 1.2e-240 837.0 799 56.1
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 2.9e-239 832.4 803 53.3
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 3.8e-239 832.0 801 53.2
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 2.1e-237 826.2 799 55.7
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 7.9e-237 824.3 805 53.7
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 5.1e-236 821.6 810 53.8
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 5.6e-235 818.1 793 53.7
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 9.6e-235 817.4 794 54.3
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.3e-234 817.0 815 53.7
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 1.6e-234 816.6 805 53.4
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 1.6e-234 816.6 799 54.2
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.1e-233 813.9 815 53.6
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 1.8e-233 813.1 793 52.7
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 9.0e-233 810.8 858 52.3
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 1.7e-231 806.6 793 52.6
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 6.5e-231 804.7 798 51.6
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 6.0e-229 798.1 806 52.1
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 6.0e-229 798.1 804 53.9
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 3.9e-228 795.4 795 52.6
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 8.7e-228 794.3 796 52.1
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.1e-227 793.9 796 52.4
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 1.1e-227 793.9 812 49.6
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 2.5e-227 792.7 805 52.2
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 1.1e-225 787.3 790 51.3
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 2.4e-225 786.2 825 52.5
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 5.3e-225 785.0 798 51.3
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 1.2e-224 783.9 798 52.4
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 1.7e-223 780.0 800 51.5
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 1.4e-222 776.9 796 51.1
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 3.2e-222 775.8 794 51.3
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.6e-221 773.5 790 51.8
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 6.7e-220 768.1 813 49.8
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 2.5e-219 766.1 797 50.7
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 2.5e-219 766.1 804 51.2
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 3.3e-219 765.8 793 50.4
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 9.7e-219 764.2 798 50.8
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 7.7e-216 754.6 797 50.7
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 2.2e-215 753.1 791 50.3
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 3.2e-214 749.2 852 46.8
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 8.8e-212 741.1 803 48.8
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 1.1e-211 740.7 637 59.3
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 3.3e-211 739.2 800 51.8
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 3.7e-210 735.7 796 48.6
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 1.2e-205 720.7 792 47.7
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 3.6e-205 719.2 642 57.2
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 2.3e-204 716.5 795 50.6
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 6.7e-204 714.9 737 49.9
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 3.7e-202 709.1 796 50.4
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 1.6e-200 703.7 780 49.1
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 1.1e-193 681.0 785 46.0
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 1.2e-184 651.0 833 45.9
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 8.6e-183 644.8 809 44.0
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 1.7e-170 604.0 591 54.0
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 4.9e-170 602.4 649 51.3
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 1.5e-155 554.3 599 50.9
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 5.6e-150 535.8 805 40.0
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 1.1e-134 485.0 791 38.8
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 1.6e-109 401.4 797 34.9
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 3.8e-98 363.6 792 33.5
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 7.9e-96 355.9 857 32.2
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 1.8e-87 328.2 413 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 3.0e-79 300.8 858 28.6
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 1.5e-78 298.5 259 59.5
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 2.2e-77 294.7 301 50.8
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 1.0e-71 275.8 255 56.5
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 2.4e-68 264.6 294 48.6
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 4.1e-68 263.8 295 48.8
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 1.1e-65 255.8 255 54.9
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.5e-57 228.0 273 46.5
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 4.4e-38 164.1 179 48.0
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.9e-37 161.4 162 54.9
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 3.0e-34 151.4 209 42.6
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-33 146.7 1034 21.4
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 9.6e-33 146.4 271 34.7
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 6.2e-32 143.7 211 40.8
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 7.1e-28 130.2 169 42.6
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 3.5e-27 127.9 87 69.0
BcaC06g34257 Brassica carinata HOM05D006677 ORTHO05D008348 4.0e-23 114.4 63 92.1
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 2.6e-22 111.7 856 21.5
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 2.6e-14 85.1 170 32.9
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 4.2e-12 77.8 122 41.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 9.3e-12 76.6 55 65.5
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 1.8e-07 62.4 67 47.8


User provided reference genes

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