Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 0.0e+00 1133.2 566 100.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.0e-306 1055.0 566 94.7
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-304 1048.5 566 94.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 9.1e-304 1046.2 566 94.0
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.5e-301 1038.1 523 99.0
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 4.7e-300 1033.9 566 92.2
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.7e-281 971.1 566 87.3
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.0e-278 963.0 566 86.4
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 6.6e-278 960.3 567 86.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.9e-277 958.7 557 87.4
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.5e-277 958.4 566 85.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.5e-277 958.4 566 85.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 7.3e-277 956.8 566 86.0
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-276 956.1 566 85.5
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-276 955.7 563 85.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-276 955.7 563 85.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.6e-276 955.7 563 85.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 8.0e-276 953.4 563 85.4
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.3e-275 951.8 523 90.4
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-275 951.0 566 85.5
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.6e-274 948.3 566 85.2
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 5.8e-274 947.2 566 85.2
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.0e-259 897.9 553 82.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.8e-235 819.3 568 75.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.2e-224 781.6 568 71.1
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 7.2e-224 780.8 562 71.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.0e-222 776.9 515 75.7
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.8e-222 776.2 567 70.0
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 8.7e-222 773.9 562 71.4
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 4.3e-221 771.5 517 74.3
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 9.7e-221 770.4 517 75.4
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.8e-220 768.8 518 74.7
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 3.7e-220 768.5 521 73.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 4.8e-220 768.1 556 70.9
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.8e-220 768.1 560 71.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 6.3e-220 767.7 521 74.5
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.3e-219 764.6 524 74.0
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.2e-218 763.5 516 73.3
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.4e-218 761.9 521 73.1
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.9e-217 758.8 513 73.3
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.0e-217 758.1 511 74.0
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 6.5e-217 757.7 516 73.8
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 8.5e-217 757.3 513 73.1
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.5e-216 755.7 526 71.9
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.4e-216 753.8 516 73.4
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 9.4e-216 753.8 525 73.0
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 6.1e-215 751.1 528 72.0
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.4e-214 750.0 519 72.4
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.5e-213 745.7 516 71.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.3e-213 745.0 527 71.3
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 5.7e-213 744.6 527 71.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.6e-210 735.7 516 71.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 4.5e-210 734.9 509 71.7
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 2.9e-209 732.3 564 67.6
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.8e-209 731.9 547 68.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.2e-207 726.9 451 80.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.6e-207 726.5 451 80.7
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.7e-207 725.7 546 68.3
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.4e-206 723.4 519 71.1
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.9e-206 721.8 516 69.8
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 6.7e-206 721.1 506 71.3
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.3e-205 718.8 516 69.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 7.4e-205 717.6 494 73.5
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 8.2e-204 714.1 491 73.3
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.8e-203 713.0 536 67.9
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.4e-203 712.6 557 65.4
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 7.0e-203 711.1 556 66.2
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.2e-202 710.3 521 68.7
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.6e-202 709.1 527 67.9
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.5e-202 708.8 517 69.8
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.5e-202 708.4 544 67.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 7.7e-202 707.6 528 67.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.7e-201 706.4 517 68.7
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-200 703.7 519 68.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.5e-200 703.4 512 69.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.2e-200 701.8 510 68.8
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.2e-200 701.0 519 68.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 7.2e-200 701.0 511 68.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.6e-199 699.9 528 66.5
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.6e-199 699.9 528 66.7
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.0e-198 697.2 556 64.0
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.3e-198 696.0 557 63.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.0e-198 695.7 554 66.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 3.0e-198 695.7 515 67.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 6.7e-198 694.5 516 67.4
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.0e-197 693.0 477 73.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 3.3e-197 692.2 477 73.8
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 9.7e-197 690.6 484 71.1
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.7e-193 679.9 557 63.2
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.5e-192 676.0 519 65.1
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.2e-192 675.6 424 80.2
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 4.4e-189 665.2 568 61.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.3e-188 663.7 542 63.3
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.3e-188 663.7 521 62.6
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-187 660.2 515 65.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.4e-187 660.2 536 62.5
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.8e-187 659.8 515 65.6
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-187 659.4 533 63.6
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 4.1e-187 658.7 519 63.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 4.1e-187 658.7 532 64.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-186 656.8 533 63.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.5e-186 655.2 451 71.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.3e-185 653.7 541 61.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 6.5e-185 651.4 519 63.8
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.1e-184 650.6 556 62.6
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.6e-183 646.7 521 63.1
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.0e-182 644.0 519 62.4
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.8e-182 643.3 433 75.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.3e-177 627.1 517 58.8
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.8e-177 625.5 452 67.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 6.6e-177 624.8 448 71.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.6e-177 624.8 527 59.0
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 8.9e-174 614.4 530 58.1
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.0e-169 599.4 543 57.5
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.7e-164 583.6 379 76.0
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.1e-158 564.3 376 74.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 3.5e-154 549.3 523 55.4
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.1e-150 537.7 452 60.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.2e-150 535.4 368 72.0
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-147 527.7 409 66.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-142 510.8 517 54.5
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.4e-140 501.9 372 68.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.2e-139 499.6 353 70.0
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.3e-137 494.2 304 78.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.4e-134 483.4 350 68.6
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.9e-124 449.1 355 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.6e-122 444.1 506 46.4
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.1e-122 443.7 452 48.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 7.4e-120 435.3 449 48.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.8e-113 414.1 547 42.6
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 5.9e-109 399.1 531 40.7
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 6.1e-106 389.0 194 100.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 7.7e-93 345.5 210 81.4
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.9e-89 333.2 264 65.5
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 6.1e-74 282.7 143 100.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-59 235.0 199 61.3
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 3.7e-55 220.3 167 67.1
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.4e-48 197.2 165 60.0
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.1e-43 182.2 139 65.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.8e-42 177.6 152 60.5
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 8.1e-42 176.0 164 55.5
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 5.2e-41 173.3 143 60.8
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 8.9e-33 146.0 151 52.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.2e-31 141.4 97 67.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 3.5e-29 134.0 149 51.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.2e-25 120.2 123 53.7
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 5.1e-20 103.6 76 68.4
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-19 102.4 70 68.6
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.6e-19 99.4 494 22.7
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 8.1e-18 96.3 477 23.7
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 6.7e-12 76.6 63 58.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 6.7e-12 76.6 63 58.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.5e-08 65.5 46 58.7
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 2.6e-08 64.7 50 54.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 9.9e-08 62.8 54 53.7
BcaB05g22957 Brassica carinata HOM05D004898 ORTHO05D091614 1.3e-07 62.4 33 81.8
Mapoly0047s0018 Marchantia polymorpha HOM05D011351 ORTHO05D013707 1.9e-06 58.5 146 25.3


User provided reference genes

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