Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-90 335.5 167 100.0
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-72 275.4 167 86.2
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 6.4e-72 274.2 160 88.8
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.2e-71 271.9 152 91.4
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-71 271.6 160 88.1
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-70 269.6 153 89.5
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.1e-67 259.2 159 82.4
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-64 248.1 159 79.2
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 4.9e-64 248.1 159 79.2
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.6e-60 234.6 161 77.6
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 2.8e-59 232.3 156 77.6
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 2.8e-59 232.3 156 77.6
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.8e-58 229.6 158 75.3
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 9.9e-57 223.8 160 73.8
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 9.9e-57 223.8 159 71.7
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.4e-56 220.7 160 72.5
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-54 214.9 140 79.3
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.1e-50 202.2 162 66.7
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 5.1e-45 184.9 154 63.6
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-43 180.3 154 62.3
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 8.2e-43 177.6 156 62.2
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.1e-42 175.3 155 61.9
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 5.9e-41 171.4 154 61.7
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 5.9e-41 171.4 156 60.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-40 170.6 156 60.9
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-40 170.6 156 60.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-40 170.2 154 61.0
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 3.8e-40 168.7 152 57.2
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 8.5e-40 167.5 138 61.6
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 7.2e-39 164.5 154 60.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-38 162.9 154 59.1
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 6.1e-38 161.4 154 60.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-37 159.5 154 59.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.9e-37 158.7 154 58.4
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.1e-37 158.3 150 58.0
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 3.3e-36 155.6 89 80.9
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.8e-34 149.8 131 57.3
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.3e-34 148.3 149 54.4
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.5e-33 145.2 149 54.4
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 7.7e-33 144.4 132 56.1
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.2e-32 142.9 149 53.7
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.0e-32 141.7 149 53.0
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-31 140.2 149 51.0
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-31 139.8 149 54.4
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.9e-31 139.8 149 54.4
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.5e-31 139.4 148 54.1
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 7.2e-31 137.9 157 49.0
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 9.4e-31 137.5 142 54.9
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.2e-30 137.1 149 50.3
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 3.6e-30 135.6 148 50.7
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 3.6e-30 135.6 148 50.7
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 6.1e-30 134.8 148 50.7
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 6.1e-30 134.8 148 50.7
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 6.1e-30 134.8 148 50.7
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-27 126.7 138 50.0
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 6.9e-26 121.3 148 45.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 3.4e-25 119.0 163 42.3
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.9e-23 113.2 172 39.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.2e-23 112.5 137 42.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 2.7e-22 109.4 173 42.2
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.0e-21 107.5 165 40.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.8e-21 106.7 153 43.1
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 3.0e-21 105.9 151 39.7
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.7e-21 104.8 154 42.2
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 8.8e-21 104.4 168 37.5
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 8.8e-21 104.4 140 42.9
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.1e-20 104.0 146 41.1
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.1e-20 104.0 148 41.9
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.5e-20 103.6 148 37.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.5e-20 103.6 142 42.3
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.5e-20 103.6 134 40.3
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.0e-20 103.2 178 37.1
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.6e-20 102.8 153 40.5
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 3.3e-20 102.4 136 38.2
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 3.3e-20 102.4 80 66.2
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 3.3e-20 102.4 136 38.2
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.3e-20 102.4 165 37.0
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 5.7e-20 101.7 131 40.5
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 5.7e-20 101.7 167 37.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 7.4e-20 101.3 149 37.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 7.4e-20 101.3 163 35.6
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 7.4e-20 101.3 129 41.1
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 9.7e-20 100.9 135 41.5
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 9.7e-20 100.9 129 41.1
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.3e-19 100.5 169 38.5
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.3e-19 100.5 150 40.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-19 100.5 141 43.3
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.7e-19 100.1 168 38.1
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.7e-19 100.1 146 42.5
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.7e-19 100.1 141 40.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.2e-19 99.8 129 39.5
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.2e-19 99.8 168 38.7
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.8e-19 99.4 140 43.6
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.8e-19 99.4 158 34.8
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 3.7e-19 99.0 143 41.3
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.7e-19 99.0 140 35.7
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.7e-19 99.0 139 36.7
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 3.7e-19 99.0 139 36.7
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.8e-19 98.6 136 39.0
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 4.8e-19 98.6 165 38.8
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 6.3e-19 98.2 164 37.2
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 6.3e-19 98.2 169 34.9
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 6.3e-19 98.2 165 37.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.3e-19 98.2 164 37.8
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 6.3e-19 98.2 138 44.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 6.3e-19 98.2 129 41.1
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 8.2e-19 97.8 129 41.1
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 8.2e-19 97.8 138 42.0
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 8.2e-19 97.8 147 42.9
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.2e-19 97.8 162 35.8
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.2e-19 97.8 162 35.8
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.1e-18 97.4 156 35.3
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 1.1e-18 97.4 170 37.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.4e-18 97.1 169 37.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.8e-18 96.7 163 39.9
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.8e-18 96.7 164 36.0
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 2.4e-18 96.3 162 36.4
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 2.4e-18 96.3 148 41.9
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.4e-18 96.3 163 38.0
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 3.1e-18 95.9 137 38.0
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.3e-18 95.1 162 35.2
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 5.3e-18 95.1 145 37.2
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.0e-18 94.7 155 35.5
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 7.0e-18 94.7 143 35.0
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 7.0e-18 94.7 143 35.0
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 7.0e-18 94.7 131 42.7
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 7.0e-18 94.7 134 38.8
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 9.1e-18 94.4 149 36.2
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.2e-17 94.0 168 35.7
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.6e-17 93.6 178 33.7
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.6e-17 93.6 169 36.7
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.0e-17 93.2 143 35.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.0e-17 93.2 136 39.7
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.0e-17 93.2 135 39.3
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.6e-17 92.8 128 40.6
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 3.5e-17 92.4 139 37.4
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.5e-17 92.4 144 36.1
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 3.5e-17 92.4 158 37.3
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 4.5e-17 92.0 151 35.1
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 4.5e-17 92.0 146 36.3
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 4.5e-17 92.0 163 38.0
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.9e-17 91.7 130 38.5
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 5.9e-17 91.7 164 36.0
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.0e-16 90.9 129 39.5
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.3e-16 90.5 131 42.0
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.3e-16 90.5 161 32.3
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-16 90.5 174 35.1
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.3e-16 90.5 153 39.2
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.7e-16 90.1 172 35.5
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.7e-16 90.1 143 36.4
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.2e-16 89.7 148 38.5
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.2e-16 89.7 179 34.6
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 2.9e-16 89.4 137 36.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 5.0e-16 88.6 137 37.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 5.0e-16 88.6 137 37.2
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.0e-16 88.6 149 36.2
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.1e-15 87.4 162 36.4
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.5e-15 87.0 177 36.2
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.5e-15 87.0 141 39.0
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.5e-15 87.0 136 38.2
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.9e-15 86.7 176 36.4
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 2.5e-15 86.3 146 34.9
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.2e-15 85.9 173 36.4
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.5e-15 85.1 138 38.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 7.2e-15 84.7 167 32.9
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.2e-14 84.0 130 38.5
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.6e-14 83.6 171 33.9
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.6e-14 83.6 133 37.6
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.6e-14 83.6 137 34.3
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.6e-14 83.6 193 33.2
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.6e-14 82.4 193 31.6
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 6.1e-14 81.6 137 34.3
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.0e-13 79.3 141 34.0
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 4.0e-13 79.0 89 42.7
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 6.7e-13 78.2 139 35.3
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.3e-11 73.9 76 43.4
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.8e-10 70.1 86 46.5
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.9e-08 62.8 114 33.3
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 5.0e-08 62.0 94 37.2
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 4.2e-07 58.9 48 58.3


User provided reference genes

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