Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 2.0e-149 532.3 259 100.0
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 2.3e-145 518.8 259 98.1
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 2.4e-142 508.8 284 90.5
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 1.5e-128 463.0 262 88.5
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 4.1e-126 454.9 262 87.8
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 7.0e-126 454.1 263 88.6
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 7.0e-126 454.1 263 88.6
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 2.9e-124 448.7 255 87.5
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-118 429.9 287 77.7
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 3.0e-92 342.4 241 69.7
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 1.1e-91 340.5 251 68.5
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 8.1e-90 334.3 237 70.9
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 4.9e-87 325.1 252 66.3
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 7.1e-86 321.2 252 65.5
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 4.6e-85 318.5 254 66.5
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.1e-84 315.1 256 63.7
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.1e-83 313.9 248 68.1
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 6.2e-82 308.1 244 66.8
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 4.9e-79 298.5 204 70.6
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.4e-78 297.0 239 61.5
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 1.2e-77 293.9 258 60.5
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 7.9e-77 291.2 264 59.5
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-76 290.4 264 59.5
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.3e-75 285.4 254 58.3
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 2.8e-74 282.7 262 57.3
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.8e-74 282.0 243 59.3
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.8e-73 280.0 263 57.0
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-73 280.0 273 56.0
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.8e-73 280.0 263 57.0
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 9.0e-73 277.7 250 59.6
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-72 277.3 260 58.1
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-72 277.3 268 56.7
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 3.8e-71 272.3 276 53.6
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-70 270.4 276 53.3
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-70 270.0 268 56.3
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 3.2e-70 269.2 249 56.6
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 9.3e-70 267.7 223 62.8
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 4.6e-69 265.4 231 58.4
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 7.9e-69 264.6 232 59.1
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 9.6e-67 257.7 256 55.1
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 3.7e-66 255.8 232 59.5
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-64 250.4 209 63.2
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 2.6e-64 249.6 242 56.2
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 8.4e-63 244.6 243 53.5
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.2e-62 242.3 238 54.6
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 2.1e-61 240.0 224 57.6
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 1.8e-57 226.9 277 47.7
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.8e-57 226.9 258 49.2
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-56 223.0 213 54.9
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-55 220.7 258 48.1
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-55 220.7 202 55.4
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 3.8e-55 219.2 227 52.9
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-54 217.2 221 53.8
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 7.9e-53 211.5 228 53.1
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 5.1e-52 208.8 141 73.8
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 5.3e-49 198.7 215 52.6
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 1.0e-47 194.5 187 54.0
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-41 174.1 224 44.6
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.0e-36 157.9 138 60.1
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 3.3e-35 152.9 137 58.4
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 6.3e-34 148.7 146 54.8
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 9.1e-33 144.8 266 35.0
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.2e-32 144.4 264 35.2
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 5.9e-32 142.1 266 34.2
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 5.9e-32 142.1 266 34.2
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.3e-31 141.0 264 33.3
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-31 141.0 265 35.1
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 2.2e-31 140.2 264 32.2
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 3.2e-30 136.3 254 32.3
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 3.2e-30 136.3 242 34.7
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-29 133.7 263 31.9
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.7e-29 133.3 246 33.7
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.1e-29 132.1 263 32.3
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-28 129.8 240 33.3
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-28 129.8 240 33.3
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 3.0e-28 129.8 251 32.7
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 4.0e-28 129.4 251 32.7
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 5.2e-28 129.0 242 33.1
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 6.8e-28 128.6 263 31.6
C07p32950 Brassica napus HOM05D008086 ORTHO05D004972 6.8e-28 128.6 120 56.7
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 6.8e-28 128.6 264 30.7
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 8.8e-28 128.3 264 31.1
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 1.2e-27 127.9 258 33.3
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 4.4e-27 125.9 264 31.4
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-26 124.4 258 32.6
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.2e-26 123.6 251 33.1
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.2e-26 123.6 240 32.1
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 2.2e-26 123.6 116 56.0
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 2.8e-26 123.2 216 34.7
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.7e-26 122.9 241 32.8
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 6.3e-26 122.1 246 31.3
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.8e-25 120.6 244 29.9
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 4.1e-25 119.4 251 31.5
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 3.5e-24 116.3 279 30.1
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.5e-24 115.9 231 32.9
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 7.7e-24 115.2 271 30.3
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 7.7e-24 115.2 292 28.1
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.0e-23 114.8 239 28.5
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.7e-23 114.0 281 29.5
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 2.2e-23 113.6 207 34.8
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 3.8e-23 112.8 285 28.1
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.8e-23 112.8 218 32.6
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 8.5e-23 111.7 269 29.0
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-22 111.3 231 29.0
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-22 111.3 231 29.0
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 4.2e-22 109.4 200 37.0
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 4.2e-22 109.4 252 30.2
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 5.5e-22 109.0 216 32.9
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.5e-22 109.0 272 28.3
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 7.2e-22 108.6 273 27.8
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-21 107.5 214 36.4
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.6e-21 107.5 241 28.6
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-21 106.7 265 28.3
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-21 106.7 235 28.9
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 3.6e-21 106.3 151 43.7
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 8.0e-21 105.1 235 28.1
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.4e-20 104.4 244 28.3
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-20 104.4 233 28.8
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-20 104.4 233 28.8
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 4.0e-20 102.8 254 29.5
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 5.2e-20 102.4 254 29.5
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 5.2e-20 102.4 275 28.0
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 8.8e-20 101.7 241 27.4
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 8.8e-20 101.7 233 27.9
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 9.8e-19 98.2 256 29.7
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-18 97.8 240 30.4
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-18 97.4 260 31.9
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-18 97.1 246 28.9
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 8.3e-18 95.1 110 40.0
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 8.3e-18 95.1 110 40.0
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 8.3e-18 95.1 243 27.6
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 1.4e-17 94.4 211 33.2
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 1.4e-17 94.4 211 33.2
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.8e-17 94.0 229 30.1
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 4.1e-17 92.8 230 28.7
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.4e-17 92.4 246 26.8
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.2e-16 91.3 243 29.2
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-16 90.9 200 32.5
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.7e-16 90.1 110 40.0
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 3.5e-16 89.7 258 28.3
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 4.5e-16 89.4 226 27.4
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 4.5e-16 89.4 226 27.4
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.0e-15 88.2 236 29.2
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.3e-15 87.8 258 25.2
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.3e-15 87.0 244 31.1
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 2.9e-15 86.7 205 31.7
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 2.9e-15 86.7 205 31.7
BolC3t18501H Brassica oleracea HOM05D008086 ORTHO05D004972 3.8e-15 86.3 140 40.0
BolC2t10844H Brassica oleracea HOM05D008086 ORTHO05D041227 6.6e-15 85.5 137 41.6
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.9e-14 84.0 108 37.0
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 9.5e-14 81.6 232 28.9
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 9.5e-14 81.6 229 29.3
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.8e-13 80.1 118 35.6
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-12 77.8 161 30.4
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.8e-12 75.5 116 37.9
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.5e-11 74.3 88 38.6
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 4.4e-11 72.8 138 33.3
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-09 68.2 214 26.2
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-09 68.2 214 26.2
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-09 68.2 214 26.2
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 5.9e-08 62.4 100 32.0
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 7.8e-08 62.0 87 41.4
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 7.8e-08 62.0 100 32.0
C02p48120 Brassica napus HOM05D008086 ORTHO05D041227 1.0e-07 61.6 71 46.5
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 1.0e-07 61.6 100 32.0
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 2.9e-07 60.1 100 31.0
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 3.9e-07 59.7 100 34.0
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 1.5e-06 57.8 96 35.4
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 1.9e-06 57.4 96 34.4


User provided reference genes

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