Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 4.8e-230 800.8 408 100.0
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.0e-227 793.1 409 99.5
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.0e-227 793.1 409 99.5
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 2.7e-217 758.4 405 96.3
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 3.0e-216 755.0 410 95.1
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 2.0e-207 725.7 404 90.6
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.7e-198 696.0 387 89.4
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.4e-197 693.0 387 88.4
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 9.2e-197 690.3 398 89.2
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 6.1e-193 677.6 386 87.0
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 3.6e-185 651.7 385 84.9
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.9e-182 642.1 382 85.1
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 1.1e-178 630.2 380 80.8
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.6e-178 627.9 382 83.2
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 4.7e-177 624.8 388 81.4
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.3e-174 616.7 381 80.6
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.1e-165 587.0 377 75.1
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.5e-164 582.0 379 74.1
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 6.0e-164 581.3 379 73.9
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.0e-163 580.5 379 73.9
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 1.3e-163 580.1 379 73.4
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.3e-163 579.3 376 72.3
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 1.1e-162 577.0 379 73.1
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 1.1e-162 577.0 379 73.1
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 5.6e-162 574.7 379 73.4
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 7.3e-162 574.3 379 71.5
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.2e-161 573.5 379 73.1
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.6e-161 573.2 379 73.4
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 3.6e-161 572.0 377 73.2
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 3.6e-161 572.0 379 72.8
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 3.6e-161 572.0 384 72.7
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.1e-160 570.5 379 71.8
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 3.1e-160 568.9 378 71.2
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 5.3e-160 568.2 379 72.6
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 9.0e-160 567.4 379 73.9
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.6e-159 565.8 379 73.6
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 3.4e-159 565.5 379 72.6
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 4.4e-159 565.1 379 72.0
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 5.8e-159 564.7 378 74.1
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 5.8e-159 564.7 378 74.1
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 7.6e-159 564.3 379 72.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 7.6e-159 564.3 378 72.8
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.9e-158 562.4 379 73.4
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 4.9e-158 561.6 379 72.3
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 1.4e-157 560.1 379 71.0
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.4e-157 560.1 381 72.2
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.9e-157 559.7 382 72.0
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 4.2e-157 558.5 387 71.1
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 5.4e-157 558.1 387 71.3
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 5.4e-157 558.1 379 70.4
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 9.3e-157 557.4 383 71.5
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 1.6e-156 556.6 379 69.7
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.1e-156 556.2 379 70.7
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 3.5e-156 555.4 379 72.3
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 7.8e-156 554.3 380 70.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.0e-155 553.9 388 71.4
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.0e-155 553.9 379 71.2
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.3e-155 553.5 383 71.0
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 2.3e-155 552.7 379 70.2
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.3e-155 552.7 380 70.0
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 3.0e-155 552.4 389 68.6
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 3.9e-155 552.0 379 71.0
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 8.7e-155 550.8 379 70.7
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.3e-153 547.0 395 68.9
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 2.1e-153 546.2 379 70.4
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 4.8e-153 545.0 375 70.1
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 8.1e-153 544.3 378 68.3
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 1.1e-152 543.9 379 69.7
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 1.1e-152 543.9 379 69.9
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.6e-151 539.3 378 68.3
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 9.9e-151 537.3 379 69.1
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.3e-150 537.0 378 68.5
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.3e-150 537.0 380 67.1
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 3.2e-149 532.3 378 66.4
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 7.1e-149 531.2 378 65.9
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.3e-147 526.9 385 67.0
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.8e-147 526.6 380 68.7
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 5.1e-147 525.0 378 65.6
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 1.1e-146 523.9 380 67.4
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 2.5e-146 522.7 381 64.3
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 5.6e-146 521.5 379 68.1
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 4.8e-145 518.5 378 63.5
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 8.1e-145 517.7 511 54.6
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 2.4e-144 516.2 379 67.8
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.5e-143 513.5 380 64.5
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.8e-142 508.8 390 64.1
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 1.1e-141 507.3 377 67.4
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 5.5e-141 505.0 345 71.0
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.2e-140 503.8 379 65.7
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 6.7e-139 498.0 378 66.1
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.1e-138 497.3 422 60.9
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 3.7e-137 492.3 379 66.8
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 4.8e-137 491.9 354 65.8
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 2.9e-134 482.6 378 63.8
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.5e-134 481.5 352 67.3
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.4e-133 480.3 308 73.7
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 7.9e-132 474.6 268 88.1
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 2.9e-126 456.1 305 74.1
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.0e-123 447.6 291 73.2
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.3e-121 438.3 291 71.8
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.8e-118 429.1 307 68.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.4e-115 420.6 393 53.7
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.1e-114 417.5 378 55.0
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 1.2e-111 407.5 330 63.0
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.3e-110 404.1 307 67.1
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.1e-109 401.0 385 55.3
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 3.2e-109 399.4 264 71.2
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 6.1e-108 395.2 397 51.4
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.4e-107 394.0 381 52.2
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 4.4e-106 389.0 378 52.1
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.2e-102 376.7 377 55.7
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.8e-99 367.1 232 76.3
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 7.0e-96 355.1 242 76.4
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 7.0e-88 328.6 266 62.0
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 2.6e-82 310.1 230 68.3
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 6.6e-62 242.3 431 36.7
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 8.6e-62 241.9 147 78.2
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.4e-59 234.6 391 37.6
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.1e-56 224.9 423 37.8
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 6.6e-54 215.7 147 74.1
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 3.0e-46 190.3 149 61.1
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 7.1e-40 169.1 110 74.5
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 6.2e-36 156.0 108 66.7
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 6.4e-33 146.0 183 43.2
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.1e-24 118.6 81 77.8
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 5.7e-21 106.3 64 76.6
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.1e-20 104.4 138 40.6
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 1.8e-19 101.3 146 42.5
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.5e-18 98.2 149 38.3
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 2.2e-12 77.8 71 56.3
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-11 73.9 71 50.7
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 3.1e-11 73.9 111 36.0
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.1e-11 73.6 68 50.0
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 9.0e-11 72.4 36 88.9
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.1e-08 65.5 36 80.6
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 9.4e-08 62.4 89 37.1


User provided reference genes

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