Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 8.5e-257 890.2 574 100.0
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 1.1e-253 879.8 574 99.5
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 9.7e-253 876.7 574 99.1
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 6.8e-214 747.7 576 88.5
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 7.5e-213 744.2 577 86.1
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 2.2e-212 742.7 578 89.1
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 1.4e-211 740.0 580 88.6
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 2.0e-210 736.1 577 86.3
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 1.1e-198 697.2 581 83.5
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 5.2e-198 694.9 581 83.1
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.7e-193 679.9 577 81.8
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 8.4e-188 661.0 573 80.1
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 1.6e-146 523.9 573 69.5
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 1.1e-139 501.1 302 87.4
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 9.4e-139 498.0 319 81.2
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 1.4e-129 467.6 302 83.4
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 2.1e-114 417.2 560 50.7
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 1.7e-111 407.5 556 59.9
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 6.3e-111 405.6 575 53.0
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 1.4e-110 404.4 604 47.0
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 2.9e-108 396.7 521 58.9
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 1.1e-107 394.8 569 58.0
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 2.3e-105 387.1 550 59.1
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 2.3e-105 387.1 576 58.3
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 5.7e-104 382.5 556 59.7
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 7.5e-104 382.1 559 59.4
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 2.9e-103 380.2 560 58.4
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 1.1e-102 378.3 555 58.6
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.4e-102 377.9 563 57.9
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.6e-101 374.4 553 59.7
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 4.6e-101 372.9 546 59.0
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 1.3e-100 371.3 567 49.6
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 3.9e-100 369.8 520 60.0
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 5.0e-100 369.4 567 55.9
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 1.5e-99 367.9 570 56.5
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 1.9e-99 367.5 562 57.5
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 1.2e-98 364.8 519 61.3
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 1.6e-98 364.4 546 50.4
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 4.7e-98 362.8 518 59.8
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 2.3e-97 360.5 562 55.2
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 5.2e-97 359.4 540 49.8
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 4.4e-96 356.3 562 56.2
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 4.4e-96 356.3 566 55.5
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 1.4e-94 351.3 523 50.3
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 5.4e-94 349.4 554 57.2
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 5.4e-94 349.4 537 57.4
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 6.6e-92 342.4 560 55.9
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 4.3e-91 339.7 562 56.6
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 5.6e-91 339.3 556 55.0
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 9.5e-91 338.6 518 57.3
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 2.8e-90 337.0 563 56.7
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 8.9e-89 332.0 567 55.0
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 1.5e-88 331.3 523 48.6
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 4.4e-88 329.7 533 50.3
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 5.8e-88 329.3 520 56.3
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 9.9e-88 328.6 562 54.3
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 1.3e-87 328.2 557 55.1
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 2.2e-87 327.4 557 54.9
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 2.4e-86 323.9 557 54.8
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 3.2e-86 323.6 574 52.4
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 7.1e-86 322.4 553 55.0
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 7.1e-86 322.4 533 55.9
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 6.6e-84 315.8 567 54.5
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 3.1e-81 307.0 493 57.8
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 6.8e-81 305.8 553 54.1
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 8.9e-81 305.4 551 55.0
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 3.4e-80 303.5 538 54.6
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 9.9e-80 302.0 519 55.3
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 1.7e-79 301.2 563 54.0
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 2.9e-79 300.4 563 54.2
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 4.9e-79 299.7 565 52.4
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 6.0e-77 292.7 553 52.3
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 8.7e-76 288.9 551 53.9
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 5.4e-70 269.6 516 52.7
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 6.0e-69 266.2 478 50.8
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 7.8e-69 265.8 474 57.8
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 3.0e-68 263.8 559 50.4
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 3.3e-67 260.4 532 51.9
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 9.6e-67 258.8 167 79.0
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 2.4e-65 254.2 537 51.8
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 4.0e-65 253.4 523 51.8
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.9e-62 244.6 156 78.8
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.2e-61 241.9 315 42.5
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 5.1e-60 236.5 291 46.7
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 7.1e-54 216.1 399 61.7
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 4.3e-51 206.8 419 33.9
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.6e-50 204.9 534 39.1
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 2.1e-50 204.5 544 39.0
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 4.5e-48 196.8 113 87.6
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 1.9e-46 191.4 283 41.7
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 2.1e-45 188.0 138 74.6
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 9.7e-43 179.1 221 42.5
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 1.3e-42 178.7 110 86.4
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 6.1e-37 159.8 297 34.3
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 7.9e-37 159.5 289 36.0
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 1.9e-35 154.8 109 64.2
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 5.7e-35 153.3 104 64.4
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 6.9e-33 146.4 206 42.2
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 7.7e-32 142.9 115 55.7
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 1.5e-14 85.5 114 43.9
Atru.chr3.508 Acer truncatum HOM05D007242 ORTHO05D009089 4.2e-14 84.0 78 57.7
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 4.2e-14 84.0 101 43.6
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 4.0e-12 77.4 134 37.3
Atru.chr3.509 Acer truncatum HOM05D007242 ORTHO05D009089 1.5e-11 75.5 52 69.2
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 2.2e-10 71.6 138 34.1
THA.LOC104809214 Tarenaya hassleriana HOM05D004079 ORTHO05D005437 4.1e-09 67.4 104 36.5
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 1.6e-08 65.5 98 38.8
ATR0006G044 Amborella trichopoda HOM05D004079 ORTHO05D009709 2.0e-08 65.1 126 32.5
FvH4_5g15730 Fragaria vesca HOM05D004079 ORTHO05D005437 3.5e-08 64.3 99 35.4
FAN18G0859 Fragaria x ananassa HOM05D004079 ORTHO05D005437 3.5e-08 64.3 99 35.4
FAN08G0428 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.5e-08 63.9 99 35.4
FAN13G1290 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.5e-08 63.9 99 35.4
Oeu006174.1 Olea europaea HOM05D004079 ORTHO05D005437 4.5e-08 63.9 119 32.8
CiPaw.11G036400 Carya illinoinensis HOM05D004079 ORTHO05D005437 5.9e-08 63.5 97 36.1
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 5.9e-08 63.5 120 30.8
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 5.9e-08 63.5 99 36.4
Aa31LG4G4980 Aethionema arabicum HOM05D004079 ORTHO05D005437 7.7e-08 63.2 91 38.5
EL10Ac5g10922 Beta vulgaris HOM05D004079 ORTHO05D005437 1.0e-07 62.8 99 35.4
FAN04G1937 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.0e-07 62.8 99 34.3
Prupe.5G184700 Prunus persica HOM05D004079 ORTHO05D005437 1.0e-07 62.8 142 31.0
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 1.7e-07 62.0 116 33.6
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 1.7e-07 62.0 116 33.6
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 1.7e-07 62.0 116 33.6
Manes.06G097200 Manihot esculenta HOM05D004079 ORTHO05D005437 1.7e-07 62.0 115 31.3
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 1.7e-07 62.0 93 36.6
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 2.2e-07 61.6 116 33.6
AUR62021753 Chenopodium quinoa HOM05D004079 ORTHO05D005437 2.2e-07 61.6 124 32.3
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 2.9e-07 61.2 91 37.4
MD14G1192100 Malus domestica HOM05D004079 ORTHO05D005437 2.9e-07 61.2 143 30.1
Aa31LG7G3680 Aethionema arabicum HOM05D004079 ORTHO05D005437 3.8e-07 60.8 102 35.3
RcHm_v2.0_Chr7g0180381 Rosa chinensis HOM05D004079 ORTHO05D005437 3.8e-07 60.8 95 34.7
COL.COLO4_37914 Corchorus olitorius HOM05D004079 ORTHO05D005437 5.0e-07 60.5 119 31.9
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 5.0e-07 60.5 143 33.6
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 5.0e-07 60.5 97 37.1
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 5.0e-07 60.5 82 42.7
CARHR019550 Cardamine hirsuta HOM05D004079 ORTHO05D005437 6.5e-07 60.1 91 37.4
Ah.02g113130 Amaranthus hybridus HOM05D004079 ORTHO05D005437 1.1e-06 59.3 125 32.0
AagrBONN_evm.TU.Sc2ySwM_344.782 Anthoceros agrestis HOM05D004079 ORTHO05D005437 1.1e-06 59.3 91 33.0
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 1.1e-06 59.3 114 33.3
A07p40430 Brassica napus HOM05D004079 ORTHO05D005437 1.1e-06 59.3 94 36.2
BraA07t31585Z Brassica rapa HOM05D004079 ORTHO05D005437 1.1e-06 59.3 94 36.2
Carub.0001s1855 Capsella rubella HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 31.8
CARHR068060 Cardamine hirsuta HOM05D004079 ORTHO05D005437 1.1e-06 59.3 115 33.9
AL1G31480 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 1.5e-06 58.9 91 36.3
AL2G34640 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 1.5e-06 58.9 91 37.4
AT1G18900 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 1.5e-06 58.9 91 36.3
AUR62008344 Chenopodium quinoa HOM05D004079 ORTHO05D005437 1.5e-06 58.9 124 31.5
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 1.5e-06 58.9 118 33.1
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.5e-06 58.9 97 30.9
AagrBONN_evm.TU.Sc2ySwM_117.3400 Anthoceros agrestis HOM05D004079 ORTHO05D005437 1.9e-06 58.5 90 30.0
AT1G74750 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 1.9e-06 58.5 139 30.2
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 1.9e-06 58.5 115 32.2
Thecc.03G077200 Theobroma cacao HOM05D004079 ORTHO05D005437 1.9e-06 58.5 97 35.1
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 2.5e-06 58.2 78 38.5
Gohir.A11G028901 Gossypium hirsutum HOM05D004079 ORTHO05D005437 2.5e-06 58.2 82 40.2
Gohir.D11G032200 Gossypium hirsutum HOM05D004079 ORTHO05D005437 2.5e-06 58.2 82 40.2
Gorai.007G035000 Gossypium raimondii HOM05D004079 ORTHO05D005437 2.5e-06 58.2 82 40.2
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 2.5e-06 58.2 102 30.4
QL10p014896 Quercus lobata HOM05D004079 ORTHO05D005437 2.5e-06 58.2 97 34.0
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 3.2e-06 57.8 91 36.3
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 5.5e-06 57.0 99 40.4
Carub.0002s2154 Capsella rubella HOM05D004079 ORTHO05D005437 5.5e-06 57.0 106 33.0
Hma1.2p1_0104F.1_g050360 Hydrangea macrophylla HOM05D004079 ORTHO05D005437 5.5e-06 57.0 96 35.4
Nn4g23007 Nelumbo nucifera HOM05D004079 ORTHO05D005437 5.5e-06 57.0 135 28.9
CANSAT80G2283 Cannabis sativa HOM05D004079 ORTHO05D005437 7.2e-06 56.6 118 32.2
CDE06G0164 Ceratophyllum demersum HOM05D004079 ORTHO05D005437 7.2e-06 56.6 140 31.4
AUR62021315 Chenopodium quinoa HOM05D003056 ORTHO05D003422 7.2e-06 56.6 78 39.7
AUR62033232 Chenopodium quinoa HOM05D003056 ORTHO05D003422 7.2e-06 56.6 78 39.7
CsaV3_5G039930 Cucumis sativus L. HOM05D000001 ORTHO05D009433 7.2e-06 56.6 198 23.7
Eucgr.K02912 Eucalyptus grandis HOM05D004079 ORTHO05D005437 7.2e-06 56.6 93 34.4
Mapoly0026s0069 Marchantia polymorpha HOM05D004079 ORTHO05D005437 7.2e-06 56.6 94 29.8
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 7.2e-06 56.6 97 30.9
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 7.2e-06 56.6 82 39.0
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 9.4e-06 56.2 189 22.2
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 9.4e-06 56.2 189 22.2
Duzib205G1164 Durio zibethinus HOM05D004079 ORTHO05D005437 9.4e-06 56.2 97 34.0
Thhalv10018113m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 9.4e-06 56.2 91 35.2


User provided reference genes

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