Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 2.6e-56 221.9 114 100.0
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 2.0e-48 195.7 113 88.5
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 2.0e-48 195.7 113 88.5
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 2.6e-48 195.3 113 87.6
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 2.6e-48 195.3 113 87.6
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 2.6e-48 195.3 113 87.6
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 5.8e-48 194.1 113 86.7
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 5.8e-48 194.1 113 85.8
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 4.1e-46 188.0 113 84.1
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.5e-43 179.5 112 79.5
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 3.3e-43 178.3 99 90.9
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 4.3e-43 177.9 113 79.6
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 9.5e-43 176.8 99 89.9
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 4.7e-42 174.5 112 78.6
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 1.1e-41 173.3 112 73.2
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.1e-41 173.3 113 76.1
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 2.0e-40 169.1 113 80.5
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.6e-37 159.5 104 76.0
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 2.8e-34 148.7 109 66.1
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 8.9e-33 143.7 95 82.1
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 1.5e-24 116.3 111 51.4
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 2.6e-24 115.5 111 52.3
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 3.4e-24 115.2 111 52.3
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 3.4e-24 115.2 108 56.5
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 7.6e-24 114.0 111 50.5
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 2.9e-23 112.1 111 51.4
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 2.9e-23 112.1 108 50.9
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 4.9e-23 111.3 111 53.2
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 6.4e-23 110.9 111 50.5
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.4e-22 109.8 110 50.0
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.9e-22 109.4 110 49.1
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 5.4e-22 107.8 108 50.9
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 5.4e-22 107.8 109 51.4
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 7.1e-22 107.5 108 50.0
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 9.3e-22 107.1 108 50.0
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 1.6e-21 106.3 108 50.0
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 2.1e-21 105.9 107 52.3
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 2.3e-20 102.4 107 44.9
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 3.9e-20 101.7 109 47.7
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 2.5e-19 99.0 108 50.0
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 1.3e-18 96.7 107 46.7
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.1e-18 95.9 108 47.2
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.1e-18 95.9 111 45.0
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 2.1e-18 95.9 108 46.3
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 1.1e-17 93.6 108 43.5
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 1.8e-17 92.8 107 45.8
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 4.0e-17 91.7 108 43.5
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 6.9e-17 90.9 102 46.1
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 2.6e-16 89.0 108 45.4
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 3.4e-16 88.6 105 38.1
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 5.8e-16 87.8 107 41.1
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 5.8e-16 87.8 107 42.1
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 1.3e-15 86.7 108 45.4
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 1.3e-15 86.7 111 42.3
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 1.7e-15 86.3 102 45.1
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 1.7e-15 86.3 111 44.1
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 1.7e-15 86.3 108 41.7
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 1.7e-15 86.3 108 42.6
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 1.7e-15 86.3 108 39.8
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 2.2e-15 85.9 110 43.6
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 2.9e-15 85.5 108 45.4
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 2.9e-15 85.5 108 43.5
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 3.8e-15 85.1 109 43.1
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 3.8e-15 85.1 108 42.6
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 4.9e-15 84.7 111 43.2
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 4.9e-15 84.7 108 43.5
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 8.4e-15 84.0 108 40.7
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 3.2e-14 82.0 109 40.4
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 4.2e-14 81.6 111 38.7
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 9.3e-14 80.5 111 37.8
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 1.2e-13 80.1 102 43.1
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 2.1e-13 79.3 103 42.7
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 2.7e-13 79.0 110 40.9
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 6.0e-13 77.8 103 43.7
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 7.9e-13 77.4 102 43.1
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 3.9e-12 75.1 107 36.4
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 5.1e-12 74.7 105 38.1
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 5.1e-12 74.7 108 37.0
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 6.7e-12 74.3 108 39.8
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 8.7e-12 73.9 104 35.6
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 8.7e-12 73.9 111 37.8
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 8.7e-12 73.9 92 41.3
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 1.5e-11 73.2 109 36.7
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 1.6e-10 69.7 83 43.4
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 2.1e-10 69.3 80 45.0
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 3.6e-10 68.6 107 36.4
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.0e-08 62.8 104 30.8
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.7e-07 59.7 101 34.7
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 4.9e-07 58.2 104 33.7


User provided reference genes

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