Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34155 Brassica carinata HOM05D000949 ORTHO05D031817 1.8e-63 245.7 122 100.0
A06p44350 Brassica napus HOM05D000949 ORTHO05D031817 8.3e-37 157.1 101 81.2
BraA06t27310Z Brassica rapa HOM05D000949 ORTHO05D031817 8.3e-37 157.1 101 81.2
BcaC06g34205 Brassica carinata HOM05D000949 ORTHO05D001276 1.1e-31 140.2 145 58.6
BolC7t43708H Brassica oleracea HOM05D000949 ORTHO05D001276 1.1e-31 140.2 145 58.6
BraA06t27327Z Brassica rapa HOM05D000949 ORTHO05D001276 1.4e-31 139.8 139 61.2
C07p31690 Brassica napus HOM05D000949 ORTHO05D001276 8.9e-31 137.1 145 57.9
A06p44530 Brassica napus HOM05D000949 ORTHO05D001276 2.4e-28 129.0 139 56.8
BcaC06g31321 Brassica carinata HOM05D000949 ORTHO05D001276 1.6e-27 126.3 130 55.4
Thhalv10006945m.g Eutrema salsugineum HOM05D000949 ORTHO05D001276 3.1e-23 112.1 164 43.3
Sp1g16040 Schrenkiella parvula HOM05D000949 ORTHO05D001276 2.0e-22 109.4 169 41.4
C07p32100 Brassica napus HOM05D000949 ORTHO05D001276 3.4e-22 108.6 53 100.0
BolC7t43751H Brassica oleracea HOM05D000949 ORTHO05D001276 3.4e-22 108.6 53 100.0
A08p30600 Brassica napus HOM05D000949 ORTHO05D001276 2.2e-21 105.9 165 40.6
BraA08t34991Z Brassica rapa HOM05D000949 ORTHO05D001276 2.2e-21 105.9 165 40.6
Carub.0001s1768 Capsella rubella HOM05D000949 ORTHO05D001276 2.2e-21 105.9 166 40.4
C08p43590 Brassica napus HOM05D000949 ORTHO05D001276 4.9e-21 104.8 172 40.1
BolC8t51905H Brassica oleracea HOM05D000949 ORTHO05D001276 4.9e-21 104.8 172 40.1
A09p60150 Brassica napus HOM05D000949 ORTHO05D001276 5.4e-20 101.3 173 39.9
BraA09t41384Z Brassica rapa HOM05D000949 ORTHO05D001276 5.4e-20 101.3 173 39.9
AL1G30340 Arabidopsis lyrata HOM05D000949 ORTHO05D001276 1.6e-19 99.8 165 38.8
AT1G17980 Arabidopsis thaliana HOM05D000949 ORTHO05D001276 1.0e-18 97.1 165 38.8
C08p18310 Brassica napus HOM05D000949 ORTHO05D001276 1.7e-18 96.3 164 39.0
BolC8t49465H Brassica oleracea HOM05D000949 ORTHO05D001276 1.7e-18 96.3 164 39.0
CARHR018590 Cardamine hirsuta HOM05D000949 ORTHO05D001276 3.9e-18 95.1 162 39.5
Sp2g21980 Schrenkiella parvula HOM05D000949 ORTHO05D001276 1.3e-13 80.1 135 40.0
Aa31LG7G3030 Aethionema arabicum HOM05D000949 ORTHO05D001276 2.9e-13 79.0 150 34.7
BcaC06g32471 Brassica carinata HOM05D000949 ORTHO05D093406 2.1e-08 62.8 45 71.1
THA.LOC104812155 Tarenaya hassleriana HOM05D000949 ORTHO05D001276 2.1e-08 62.8 124 37.1
Aa31LG4G4050 Aethionema arabicum HOM05D000949 ORTHO05D001276 2.8e-08 62.4 135 31.9
CiPaw.16G089500 Carya illinoinensis HOM05D000949 ORTHO05D001276 4.8e-08 61.6 48 64.6
Lj4g0024044 Lotus japonicus HOM05D000949 ORTHO05D001276 4.8e-08 61.6 49 59.2
Gohir.A09G176100 Gossypium hirsutum HOM05D000949 ORTHO05D001276 6.2e-08 61.2 85 43.5
Gorai.006G193600 Gossypium raimondii HOM05D000949 ORTHO05D001276 6.2e-08 61.2 85 43.5
Gohir.D09G171800 Gossypium hirsutum HOM05D000949 ORTHO05D001276 8.1e-08 60.8 85 43.5
arahy.Tifrunner.gnm1.ann1.594W3X Arachis hypogaea HOM05D000949 ORTHO05D001276 1.4e-07 60.1 44 68.2
EL10Ac3g07265 Beta vulgaris HOM05D000949 ORTHO05D001276 1.4e-07 60.1 44 65.9
arahy.Tifrunner.gnm1.ann1.HKPY8E Arachis hypogaea HOM05D000949 ORTHO05D001276 1.8e-07 59.7 44 65.9
CiPaw.15G138000 Carya illinoinensis HOM05D000949 ORTHO05D001276 2.4e-07 59.3 68 50.0
COL.COLO4_04946 Corchorus olitorius HOM05D000949 ORTHO05D001276 3.1e-07 58.9 104 38.5
Lalb_Chr16g0387271 Lupinus albus HOM05D000949 ORTHO05D001276 4.0e-07 58.5 68 48.5
Duzib205G0274 Durio zibethinus HOM05D000949 ORTHO05D001276 5.3e-07 58.2 109 33.0
CiPaw.15G137900 Carya illinoinensis HOM05D000949 ORTHO05D001276 6.9e-07 57.8 67 49.3
Phvul.002G325900 Phaseolus vulgaris HOM05D000949 ORTHO05D001276 6.9e-07 57.8 69 52.2
Duzib084G0139 Durio zibethinus HOM05D000949 ORTHO05D001276 9.0e-07 57.4 115 33.0
MD14G1231300 Malus domestica HOM05D000949 ORTHO05D001276 9.0e-07 57.4 39 71.8
TPR.G12777 Trifolium pratense HOM05D000949 ORTHO05D001276 9.0e-07 57.4 47 61.7
MD17G1263100 Malus domestica HOM05D000949 ORTHO05D001276 1.2e-06 57.0 71 46.5
Manes.01G015800 Manihot esculenta HOM05D000949 ORTHO05D001276 1.2e-06 57.0 45 60.0
Cpa.g.sc3.454 Carica papaya HOM05D000949 ORTHO05D001276 1.5e-06 56.6 49 57.1
Sabra15G0042100 Salix brachista HOM05D000949 ORTHO05D001276 1.5e-06 56.6 49 57.1
Ah.04g150780 Amaranthus hybridus HOM05D000949 ORTHO05D001276 2.0e-06 56.2 42 61.9
ClCG04G010850 Citrullus lanatus HOM05D000949 ORTHO05D001276 2.0e-06 56.2 39 71.8
Ca_25464_v3 Cicer arietinum L. HOM05D000949 ORTHO05D001276 2.6e-06 55.8 48 54.2
PSO063G2920 Papaver somniferum HOM05D000949 ORTHO05D001276 2.6e-06 55.8 87 41.4
PSO832G2251 Papaver somniferum HOM05D000949 ORTHO05D001276 2.6e-06 55.8 87 41.4
Sed0008221 Sechium edule HOM05D000949 ORTHO05D001276 2.6e-06 55.8 70 47.1
Thecc.03G044600 Theobroma cacao HOM05D000949 ORTHO05D001276 2.6e-06 55.8 69 47.8
Lalb_Chr09g0330641 Lupinus albus HOM05D000949 ORTHO05D001276 4.5e-06 55.1 68 47.1
Manes.05G137200 Manihot esculenta HOM05D000949 ORTHO05D001276 4.5e-06 55.1 84 46.4
Sed0016849 Sechium edule HOM05D000949 ORTHO05D001276 4.5e-06 55.1 44 61.4
Ciclev10011139m.g Citrus clementina HOM05D000949 ORTHO05D001276 7.6e-06 54.3 44 59.1
MD09G1233900 Malus domestica HOM05D000949 ORTHO05D001276 7.6e-06 54.3 92 38.0
Hund02346 Selenicereus undatus HOM05D000949 ORTHO05D001276 7.6e-06 54.3 44 56.8
Cfa019721 Carpinus fangiana HOM05D000949 ORTHO05D001276 1.0e-05 53.9 48 64.6
CsaV3_1G006980 Cucumis sativus L. HOM05D000949 ORTHO05D001276 1.0e-05 53.9 39 69.2
Hma1.2p1_1612F.1_g293590 Hydrangea macrophylla HOM05D000949 ORTHO05D001276 1.0e-05 53.9 81 39.5
VMungo0251G0706 Vigna mungo HOM05D000949 ORTHO05D001276 1.0e-05 53.9 48 54.2


User provided reference genes

Program Settings