Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34153 Brassica carinata HOM05D001866 ORTHO05D027117 3.3e-43 177.9 88 100.0
C07p32120 Brassica napus HOM05D001866 ORTHO05D027117 3.3e-43 177.9 88 100.0
BcaB02g09400 Brassica carinata HOM05D001866 ORTHO05D001915 1.8e-28 129.0 79 84.8
BraA03t11219Z Brassica rapa HOM05D001866 ORTHO05D001915 8.7e-28 126.7 86 76.7
BcaC02g11689 Brassica carinata HOM05D001866 ORTHO05D001915 3.3e-27 124.8 79 82.3
A03p19660 Brassica napus HOM05D001866 ORTHO05D001915 3.3e-27 124.8 86 76.7
BolC4t22881H Brassica oleracea HOM05D001866 ORTHO05D001915 3.3e-27 124.8 79 82.3
BcaC01g05714 Brassica carinata HOM05D001866 ORTHO05D001915 9.6e-27 123.2 86 75.6
BcaC02g11769 Brassica carinata HOM05D001512 ORTHO05D001574 9.6e-27 123.2 85 76.5
A05p10010 Brassica napus HOM05D001866 ORTHO05D001915 9.6e-27 123.2 79 82.3
C03p22920 Brassica napus HOM05D001866 ORTHO05D001915 9.6e-27 123.2 86 75.6
BolC3t14693H Brassica oleracea HOM05D001866 ORTHO05D001915 9.6e-27 123.2 86 75.6
C04p12340 Brassica napus HOM05D001866 ORTHO05D001915 1.3e-26 122.9 79 82.3
BraA05t19942Z Brassica rapa HOM05D001866 ORTHO05D001915 1.6e-26 122.5 79 82.3
BcaB01g03887 Brassica carinata HOM05D001866 ORTHO05D001915 2.8e-26 121.7 86 75.6
BcaB01g03888 Brassica carinata HOM05D001866 ORTHO05D027117 3.7e-26 121.3 86 74.4
Sp4g17940 Schrenkiella parvula HOM05D001866 ORTHO05D001915 6.2e-26 120.6 79 81.0
A04p27130 Brassica napus HOM05D001866 ORTHO05D001915 1.8e-25 119.0 79 78.5
BraA04t18212Z Brassica rapa HOM05D001866 ORTHO05D001915 1.8e-25 119.0 79 78.5
BcaC02g07681 Brassica carinata HOM05D001866 ORTHO05D001915 4.0e-25 117.9 79 77.2
C04p64640 Brassica napus HOM05D001866 ORTHO05D001915 4.0e-25 117.9 79 77.2
BolC4t27941H Brassica oleracea HOM05D001866 ORTHO05D001915 4.0e-25 117.9 79 77.2
AT2G35680 Arabidopsis thaliana HOM05D001866 ORTHO05D001915 1.2e-24 116.3 79 77.2
AL4G31760 Arabidopsis lyrata HOM05D001866 ORTHO05D001915 1.5e-24 115.9 79 77.2
BcaB06g28861 Brassica carinata HOM05D001866 ORTHO05D001915 2.0e-24 115.5 79 77.2
Thhalv10016905m.g Eutrema salsugineum HOM05D001866 ORTHO05D001915 2.6e-24 115.2 79 77.2
Carub.0004s1741 Capsella rubella HOM05D001866 ORTHO05D001915 1.0e-23 113.2 79 75.9
CARHR129920 Cardamine hirsuta HOM05D001866 ORTHO05D001915 3.8e-23 111.3 79 74.7
Aa31LG9G15060 Aethionema arabicum HOM05D001866 ORTHO05D001915 6.7e-20 100.5 79 67.1
THA.LOC104807914 Tarenaya hassleriana HOM05D001866 ORTHO05D001915 2.7e-13 78.6 78 55.1
BolC7t43753H Brassica oleracea HOM05D001866 ORTHO05D027117 6.1e-13 77.4 38 100.0
C04p11590 Brassica napus HOM05D001512 ORTHO05D001574 3.0e-12 75.1 52 80.8
THA.LOC104812768 Tarenaya hassleriana HOM05D001866 ORTHO05D001915 3.0e-12 75.1 78 55.1
BraA05t19886Z Brassica rapa HOM05D001512 ORTHO05D001574 8.8e-12 73.6 51 80.4
A05p09290 Brassica napus HOM05D001512 ORTHO05D001574 4.3e-11 71.2 51 78.4
QL12p010910 Quercus lobata HOM05D001866 ORTHO05D001915 2.8e-10 68.6 79 51.9
QL12p011132 Quercus lobata HOM05D001866 ORTHO05D001915 2.8e-10 68.6 79 51.9
Cfa012699 Carpinus fangiana HOM05D001866 ORTHO05D001915 4.8e-10 67.8 78 50.0
Manes.02G042100 Manihot esculenta HOM05D001866 ORTHO05D001915 1.1e-09 66.6 78 51.3
TAR629G2766 Trochodendron aralioides HOM05D001866 ORTHO05D001915 1.1e-09 66.6 79 48.1
Duzib084G0337 Durio zibethinus HOM05D001866 ORTHO05D001915 3.1e-09 65.1 81 48.1
COL.COLO4_37103 Corchorus olitorius HOM05D001866 ORTHO05D001915 4.1e-09 64.7 83 44.6
TWI81G0208 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 4.1e-09 64.7 79 45.6
CiPaw.12G049300 Carya illinoinensis HOM05D001866 ORTHO05D001915 5.3e-09 64.3 78 50.0
Haze_07934 Corylus avellana HOM05D001866 ORTHO05D001915 5.3e-09 64.3 78 50.0
Atru.chr9.1256 Acer truncatum HOM05D001866 ORTHO05D001915 6.9e-09 63.9 85 44.7
MD04G1061500 Malus domestica HOM05D001866 ORTHO05D001915 9.1e-09 63.5 78 46.2
Nn1g00893 Nelumbo nucifera HOM05D001866 ORTHO05D001915 9.1e-09 63.5 79 46.8
PGR042G0654 Punica granatum HOM05D001866 ORTHO05D001915 9.1e-09 63.5 78 47.4
Dinv21671 Davidia involucrata HOM05D001866 ORTHO05D001915 1.2e-08 63.2 78 47.4
FvH4_5g19640 Fragaria vesca HOM05D001866 ORTHO05D001915 1.2e-08 63.2 84 45.2
Manes.01G084600 Manihot esculenta HOM05D001866 ORTHO05D001915 1.2e-08 63.2 78 46.2
TWI15G1228 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 1.2e-08 63.2 81 43.2
CiPaw.11G083000 Carya illinoinensis HOM05D001866 ORTHO05D001915 2.0e-08 62.4 78 48.7
Nitab4.5_0002601g0040 Nicotiana tabacum HOM05D001866 ORTHO05D001915 2.0e-08 62.4 78 46.2
Oeu040696.1 Olea europaea HOM05D001866 ORTHO05D001915 2.0e-08 62.4 77 48.1
Oeu040697.1 Olea europaea HOM05D001866 ORTHO05D001915 2.0e-08 62.4 77 48.1
Solyc06g066760.3 Solanum lycopersicum HOM05D001866 ORTHO05D001915 2.0e-08 62.4 78 43.6
Sopen06g025040 Solanum pennellii HOM05D001866 ORTHO05D001915 2.0e-08 62.4 78 43.6
THA.LOC104814465 Tarenaya hassleriana HOM05D001866 ORTHO05D001915 2.0e-08 62.4 79 53.2
Dinv39179 Davidia involucrata HOM05D001866 ORTHO05D001915 2.6e-08 62.0 78 46.2
Sabra01G0124200 Salix brachista HOM05D001866 ORTHO05D001915 2.6e-08 62.0 79 49.4
Thecc.03G246600 Theobroma cacao HOM05D001866 ORTHO05D001915 2.6e-08 62.0 83 43.4
Phvul.003G223400 Phaseolus vulgaris HOM05D001866 ORTHO05D001915 3.4e-08 61.6 78 41.0
Prupe.5G063900 Prunus persica HOM05D001866 ORTHO05D001915 3.4e-08 61.6 78 43.6
Cc08_g11990 Coffea canephora HOM05D001866 ORTHO05D001915 4.5e-08 61.2 78 44.9
Migut.A01150 Erythranthe guttata HOM05D001866 ORTHO05D001915 4.5e-08 61.2 78 46.2
Lalb_Chr05g0221071 Lupinus albus HOM05D001866 ORTHO05D001915 4.5e-08 61.2 78 42.3
Actinidia12152 Actinidia chinensis HOM05D001866 ORTHO05D001915 5.9e-08 60.8 80 46.2
Ca_21994_v3 Cicer arietinum L. HOM05D001866 ORTHO05D001915 5.9e-08 60.8 78 42.3
Ciclev10020964m.g Citrus clementina HOM05D001866 ORTHO05D001915 5.9e-08 60.8 83 41.0
PGSC0003DMG400004324 Solanum tuberosum HOM05D001866 ORTHO05D001915 5.9e-08 60.8 79 49.4
Eucgr.E00396 Eucalyptus grandis HOM05D001866 ORTHO05D001915 7.7e-08 60.5 82 48.8
Thhalv10008212m.g Eutrema salsugineum HOM05D001866 ORTHO05D001915 7.7e-08 60.5 81 50.6
RcHm_v2.0_Chr7g0204371 Rosa chinensis HOM05D001866 ORTHO05D001915 7.7e-08 60.5 84 45.2
Solyc10g039280.2 Solanum lycopersicum HOM05D001866 ORTHO05D001915 7.7e-08 60.5 79 48.1
Sopen10g012150 Solanum pennellii HOM05D001866 ORTHO05D001915 7.7e-08 60.5 79 48.1
FAN04G1513 Fragaria x ananassa HOM05D001866 ORTHO05D001915 1.0e-07 60.1 84 45.2
FAN08G1465 Fragaria x ananassa HOM05D001866 ORTHO05D001915 1.0e-07 60.1 84 45.2
Nitab4.5_0007283g0070 Nicotiana tabacum HOM05D001866 ORTHO05D001915 1.0e-07 60.1 79 43.0
TWI60G1074 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 1.0e-07 60.1 82 41.5
Carub.0001s0014 Capsella rubella HOM05D001866 ORTHO05D001915 1.3e-07 59.7 80 46.2
FAN18G1346 Fragaria x ananassa HOM05D001866 ORTHO05D001915 1.3e-07 59.7 84 44.0
MD06G1055300 Malus domestica HOM05D001866 ORTHO05D001915 1.3e-07 59.7 79 44.3
PGR042G2439 Punica granatum HOM05D001866 ORTHO05D001915 1.3e-07 59.7 79 40.5
PGSC0003DMG400016539 Solanum tuberosum HOM05D001866 ORTHO05D001915 1.3e-07 59.7 78 42.3
Atru.chr5.158 Acer truncatum HOM05D001866 ORTHO05D001915 1.7e-07 59.3 79 44.3
CSS0039928 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 1.7e-07 59.3 78 43.6
Cpa.g.sc89.61 Carica papaya HOM05D001866 ORTHO05D001915 1.7e-07 59.3 85 43.5
Gohir.D11G026900 Gossypium hirsutum HOM05D001866 ORTHO05D001915 1.7e-07 59.3 83 42.2
Gorai.007G029400 Gossypium raimondii HOM05D001866 ORTHO05D001915 1.7e-07 59.3 83 42.2
CsaV3_3G002520 Cucumis sativus L. HOM05D001866 ORTHO05D001915 2.2e-07 58.9 79 43.0
Gorai.007G086300 Gossypium raimondii HOM05D001866 ORTHO05D001915 2.2e-07 58.9 78 48.7
Gohir.A11G076000 Gossypium hirsutum HOM05D001866 ORTHO05D001915 2.9e-07 58.5 78 47.4
Gohir.D11G080500 Gossypium hirsutum HOM05D001866 ORTHO05D001915 2.9e-07 58.5 78 48.7
Nitab4.5_0000210g0040 Nicotiana tabacum HOM05D001866 ORTHO05D001915 2.9e-07 58.5 79 46.8
Potri.001G154700 Populus trichocarpa HOM05D001866 ORTHO05D001915 2.9e-07 58.5 77 45.5
Sed0012311 Sechium edule HOM05D001866 ORTHO05D001915 2.9e-07 58.5 81 44.4
VMungo0251G0202 Vigna mungo HOM05D001866 ORTHO05D001915 2.9e-07 58.5 78 39.7
AL1G10160 Arabidopsis lyrata HOM05D001866 ORTHO05D001915 3.8e-07 58.2 80 47.5
Gohir.A11G027700 Gossypium hirsutum HOM05D001866 ORTHO05D001915 3.8e-07 58.2 83 41.0
Lj7A543G32 Lonicera japonica HOM05D001866 ORTHO05D001915 3.8e-07 58.2 78 51.3
CAN.G402.8 Capsicum annuum HOM05D001866 ORTHO05D001915 5.0e-07 57.8 79 44.3
Psat4g073560 Pisum sativum HOM05D001866 ORTHO05D001915 5.0e-07 57.8 78 38.5
arahy.Tifrunner.gnm1.ann1.M9MJUZ Arachis hypogaea HOM05D001866 ORTHO05D001915 6.5e-07 57.4 89 40.4
Glyma.17G144900 Glycine max HOM05D001866 ORTHO05D001915 6.5e-07 57.4 78 41.0
Medtr4g100510 Medicago truncatula HOM05D001866 ORTHO05D001915 6.5e-07 57.4 78 41.0
Nn6g33845 Nelumbo nucifera HOM05D001866 ORTHO05D001915 6.5e-07 57.4 80 45.0
Peaxi162Scf00001g00603 Petunia axillaris HOM05D001866 ORTHO05D001915 6.5e-07 57.4 81 44.4
Sabra14G0033300 Salix brachista HOM05D001866 ORTHO05D001915 6.5e-07 57.4 79 44.3
SGA_v2.0_scaffold104G30197 Striga asiatica HOM05D001866 ORTHO05D001915 6.5e-07 57.4 78 47.4
EL10Ac5g12324 Beta vulgaris HOM05D001866 ORTHO05D001915 8.5e-07 57.0 78 43.6
FAN13G2669 Fragaria x ananassa HOM05D001866 ORTHO05D001915 8.5e-07 57.0 79 46.8
Glyma.05G062900 Glycine max HOM05D001866 ORTHO05D001915 8.5e-07 57.0 81 46.9
CANSAT21G0702 Cannabis sativa HOM05D001866 ORTHO05D001915 1.1e-06 56.6 78 43.6
MELO3C013921.2 Cucumis melo HOM05D001866 ORTHO05D001915 1.1e-06 56.6 79 41.8
Lalb_Chr16g0386551 Lupinus albus HOM05D001866 ORTHO05D001915 1.1e-06 56.6 78 39.7
Nitab4.5_0010261g0020 Nicotiana tabacum HOM05D001866 ORTHO05D001915 1.1e-06 56.6 79 46.8
arahy.Tifrunner.gnm1.ann1.F69WBS Arachis hypogaea HOM05D001866 ORTHO05D001915 1.4e-06 56.2 89 40.4
AUR62018893 Chenopodium quinoa HOM05D001866 ORTHO05D001915 1.4e-06 56.2 82 45.1
Oeu000050.1 Olea europaea HOM05D001866 ORTHO05D001915 1.4e-06 56.2 80 41.2
ClCG10G002490 Citrullus lanatus HOM05D001866 ORTHO05D001915 1.9e-06 55.8 79 41.8
MBI04_g38762_MAGBIO Magnolia biondii HOM05D001866 ORTHO05D001915 1.9e-06 55.8 78 42.3
Potri.002G136700 Populus trichocarpa HOM05D001866 ORTHO05D001915 1.9e-06 55.8 81 43.2
TPR.G37672 Trifolium pratense HOM05D001866 ORTHO05D001915 1.9e-06 55.8 78 39.7
GSVIVG01006270001 Vitis vinifera HOM05D001866 ORTHO05D001915 1.9e-06 55.8 78 43.6
CSS0006232 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 2.5e-06 55.5 78 41.0
Potri.003G080000 Populus trichocarpa HOM05D001866 ORTHO05D001915 3.2e-06 55.1 84 44.0
Peaxi162Scf00346g00411 Petunia axillaris HOM05D001866 ORTHO05D001915 4.2e-06 54.7 87 41.4
Sabra03G0050000 Salix brachista HOM05D001866 ORTHO05D001915 4.2e-06 54.7 85 43.5
Sabra03G0051100 Salix brachista HOM05D001866 ORTHO05D001915 4.2e-06 54.7 85 43.5
Hund14521 Selenicereus undatus HOM05D001866 ORTHO05D001915 4.2e-06 54.7 80 45.0
vmacro13486 Vaccinium macrocarpon HOM05D001866 ORTHO05D001915 4.2e-06 54.7 81 38.3
Lj4g0026383 Lotus japonicus HOM05D001866 ORTHO05D001915 5.5e-06 54.3 78 38.5
Solyc08g078270.3 Solanum lycopersicum HOM05D001866 ORTHO05D001915 5.5e-06 54.3 78 42.3
Thecc.01G392700 Theobroma cacao HOM05D001866 ORTHO05D001915 5.5e-06 54.3 78 41.0
vmacro00016 Vaccinium macrocarpon HOM05D001866 ORTHO05D001915 5.5e-06 54.3 82 39.0
vmacro23318 Vaccinium macrocarpon HOM05D001866 ORTHO05D001915 5.5e-06 54.3 82 39.0
AUR62007127 Chenopodium quinoa HOM05D001866 ORTHO05D001915 7.2e-06 53.9 81 44.4
Hma1.2p1_1196F.1_g266050 Hydrangea macrophylla HOM05D001866 ORTHO05D001915 7.2e-06 53.9 83 39.8
Hma1.2p1_1335F.1_g276380 Hydrangea macrophylla HOM05D001866 ORTHO05D001915 7.2e-06 53.9 83 39.8
PSO063G0370 Papaver somniferum HOM05D001866 ORTHO05D001915 7.2e-06 53.9 78 42.3
Rhsim07G0034800 Rhododendron simsii HOM05D001866 ORTHO05D001915 7.2e-06 53.9 78 39.7
Sp1g00200 Schrenkiella parvula HOM05D001866 ORTHO05D001915 7.2e-06 53.9 81 45.7
Sopen08g026770 Solanum pennellii HOM05D001866 ORTHO05D001915 7.2e-06 53.9 78 42.3
PGSC0003DMG400026263 Solanum tuberosum HOM05D001866 ORTHO05D001915 7.2e-06 53.9 78 42.3
Duzib138G1413 Durio zibethinus HOM05D001866 ORTHO05D001915 9.4e-06 53.5 78 43.6
Potri.014G045500 Populus trichocarpa HOM05D001866 ORTHO05D001915 9.4e-06 53.5 79 43.0


User provided reference genes

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