Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34075 Brassica carinata HOM05D010973 ORTHO05D014088 5.4e-90 334.3 174 100.0
BolC7t43813H Brassica oleracea HOM05D010973 ORTHO05D014088 1.3e-80 303.1 177 91.5
BolC5t31476H Brassica oleracea HOM05D010973 ORTHO05D014088 1.3e-75 286.6 180 88.9
C05p27560 Brassica napus HOM05D010973 ORTHO05D014088 6.5e-67 257.7 163 86.5
BolC9t57788H Brassica oleracea HOM05D010973 ORTHO05D014088 5.0e-59 231.5 222 63.1
C09p49360 Brassica napus HOM05D010973 ORTHO05D014088 1.4e-58 229.9 222 62.6
BcaC03g13719 Brassica carinata HOM05D010973 ORTHO05D014088 9.4e-58 227.3 222 62.6
BcaC05g26903 Brassica carinata HOM05D010973 ORTHO05D014088 8.8e-56 220.7 173 74.0
C02p25290 Brassica napus HOM05D010973 ORTHO05D014088 1.1e-55 220.3 222 60.4
BcaC06g34072 Brassica carinata HOM05D010973 ORTHO05D014088 1.7e-54 216.5 144 83.3
C08p19170 Brassica napus HOM05D010973 ORTHO05D014088 1.1e-53 213.8 207 63.3
BcaC07g38975 Brassica carinata HOM05D010973 ORTHO05D014088 5.3e-53 211.5 213 61.5
C02p31140 Brassica napus HOM05D010973 ORTHO05D014088 2.0e-52 209.5 226 59.7
BcaC06g34074 Brassica carinata HOM05D010973 ORTHO05D014088 4.5e-36 155.2 98 86.7
BcaB03g13985 Brassica carinata HOM05D010973 ORTHO05D014088 1.0e-24 117.5 98 72.4
Thhalv10011596m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 1.4e-21 107.1 90 63.3
AL1G61670 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 1.2e-20 104.0 89 62.9
C06p09030 Brassica napus HOM05D002316 ORTHO05D002280 3.5e-20 102.4 99 59.6
A06p01090 Brassica napus HOM05D002316 ORTHO05D002280 5.9e-20 101.7 90 63.3
BraA06t23336Z Brassica rapa HOM05D002316 ORTHO05D002280 5.9e-20 101.7 90 63.3
Aa31LG10G1890 Aethionema arabicum HOM05D002316 ORTHO05D002280 1.0e-19 100.9 97 52.6
BcaC08g43517 Brassica carinata HOM05D002316 ORTHO05D002280 1.0e-19 100.9 99 58.6
BolC6t35981H Brassica oleracea HOM05D002316 ORTHO05D002280 1.0e-19 100.9 99 58.6
Sp1g39830 Schrenkiella parvula HOM05D002316 ORTHO05D002280 4.3e-18 95.5 73 67.1
C03p91300 Brassica napus HOM05D002316 ORTHO05D002280 7.3e-18 94.7 102 60.8
BcaB04g17097 Brassica carinata HOM05D002316 ORTHO05D002280 2.1e-17 93.2 103 60.2
BcaC01g01372 Brassica carinata HOM05D002316 ORTHO05D002280 2.1e-17 93.2 102 59.8
BolC3t21445H Brassica oleracea HOM05D002316 ORTHO05D002280 3.6e-17 92.4 102 59.8
BraA08t32224Z Brassica rapa HOM05D002316 ORTHO05D002280 6.1e-17 91.7 149 45.6
AT1G53250 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 5.8e-15 85.1 71 62.0
A08p01710 Brassica napus HOM05D002316 ORTHO05D002280 9.8e-15 84.3 141 42.6
Carub.0001s4244 Capsella rubella HOM05D002316 ORTHO05D002280 9.8e-15 84.3 73 60.3
CAN.G292.5 Capsicum annuum HOM05D002316 ORTHO05D002280 2.2e-14 83.2 100 46.0
Solyc12g014220.3 Solanum lycopersicum HOM05D002316 ORTHO05D002280 8.3e-14 81.3 89 49.4
Peaxi162Scf00934g00148 Petunia axillaris HOM05D002316 ORTHO05D002280 1.8e-13 80.1 89 49.4
Sopen12g006010 Solanum pennellii HOM05D002316 ORTHO05D002280 3.2e-13 79.3 89 47.2
Lj8A150T53 Lonicera japonica HOM05D002316 ORTHO05D002280 1.6e-12 77.0 100 44.0
Cpa.g.sc131.59 Carica papaya HOM05D002316 ORTHO05D002280 2.0e-12 76.6 111 41.4
CARHR043490 Cardamine hirsuta HOM05D002316 ORTHO05D002280 4.6e-12 75.5 101 47.5
Nitab4.5_0000035g0100 Nicotiana tabacum HOM05D002316 ORTHO05D002280 4.6e-12 75.5 83 49.4
PGSC0003DMG400015334 Solanum tuberosum HOM05D002316 ORTHO05D002280 4.6e-12 75.5 89 46.1
GSVIVG01014224001 Vitis vinifera HOM05D002316 ORTHO05D002280 1.7e-11 73.6 109 42.2
Dinv14972 Davidia involucrata HOM05D002316 ORTHO05D002280 5.0e-11 72.0 96 39.6
Nitab4.5_0005440g0080 Nicotiana tabacum HOM05D002316 ORTHO05D002280 6.6e-11 71.6 83 47.0
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 8.6e-11 71.2 94 41.5
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 1.1e-10 70.9 86 45.3
CSS0043472 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.6e-09 67.0 103 37.9
Lsat_1_v5_gn_5_127320 Lactuca sativa HOM05D000043 ORTHO05D009639 2.1e-09 66.6 91 40.7
Thecc.07G106400 Theobroma cacao HOM05D002316 ORTHO05D002280 2.1e-09 66.6 93 43.0
Gohir.D13G153100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 3.6e-09 65.9 101 38.6
Gorai.013G173000 Gossypium raimondii HOM05D002316 ORTHO05D002280 3.6e-09 65.9 101 38.6
AUR62038474 Chenopodium quinoa HOM05D002316 ORTHO05D002280 4.7e-09 65.5 101 35.6
COL.COLO4_17596 Corchorus olitorius HOM05D002316 ORTHO05D002280 4.7e-09 65.5 98 39.8
Duzib213G0315 Durio zibethinus HOM05D002316 ORTHO05D002280 4.7e-09 65.5 107 37.4
ECA234G4357 Erigeron canadensis HOM05D002316 ORTHO05D002280 4.7e-09 65.5 89 39.3
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 4.7e-09 65.5 100 42.0
Gohir.A13G148550 Gossypium hirsutum HOM05D002316 ORTHO05D002280 8.0e-09 64.7 95 40.0
Potri.011G112300 Populus trichocarpa HOM05D002316 ORTHO05D002280 8.0e-09 64.7 103 38.8
Hma1.2p1_0607F.1_g188170 Hydrangea macrophylla HOM05D002316 ORTHO05D002280 1.1e-08 64.3 87 35.6
EL10Ac4g08303 Beta vulgaris HOM05D002316 ORTHO05D002280 1.4e-08 63.9 74 43.2
Cc05_g11320 Coffea canephora HOM05D002316 ORTHO05D002280 1.4e-08 63.9 85 42.4
vmacro11915 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.4e-08 63.9 133 32.3
FAN21G3617 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.8e-08 63.5 96 43.8
DCAR_017163 Daucus carota HOM05D002316 ORTHO05D002280 2.3e-08 63.2 95 37.9
THA.LOC104810445 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 2.3e-08 63.2 100 37.0
Migut.H01980 Erythranthe guttata HOM05D002316 ORTHO05D002280 3.1e-08 62.8 100 39.0
PSO782G0144 Papaver somniferum HOM05D002478 ORTHO05D002280 3.1e-08 62.8 86 41.9
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 1.2e-07 60.8 101 38.6
Oeu061346.1 Olea europaea HOM05D002316 ORTHO05D002280 2.0e-07 60.1 91 37.4
Eucgr.F03256 Eucalyptus grandis HOM05D002316 ORTHO05D002280 2.6e-07 59.7 91 38.5
Oeu051116.1 Olea europaea HOM05D002316 ORTHO05D002280 2.6e-07 59.7 115 37.4
MD11G1260000 Malus domestica HOM05D002316 ORTHO05D002280 5.8e-07 58.5 106 35.8
Prupe.4G170000 Prunus persica HOM05D002316 ORTHO05D002280 7.5e-07 58.2 106 36.8
TAR624G0302 Trochodendron aralioides HOM05D002316 ORTHO05D002280 7.5e-07 58.2 94 37.2
HanXRQChr12g0373471 Helianthus annuus HOM05D002316 ORTHO05D002280 1.7e-06 57.0 89 33.7
Ciclev10008352m.g Citrus clementina HOM05D002316 ORTHO05D002280 2.2e-06 56.6 128 32.8
Atru.chr2.2212 Acer truncatum HOM05D002316 ORTHO05D002280 2.9e-06 56.2 75 41.3
PGR031G2525 Punica granatum HOM05D002316 ORTHO05D002280 3.7e-06 55.8 112 30.4
Sabra16G0258200 Salix brachista HOM05D002316 ORTHO05D002280 3.7e-06 55.8 79 40.5
Duzib213G0761 Durio zibethinus HOM05D002316 ORTHO05D002280 4.9e-06 55.5 72 44.4
FvH4_3g18610 Fragaria vesca HOM05D002316 ORTHO05D002280 6.4e-06 55.1 96 40.6
Sc03g0010430 Simmondsia chinensis HOM05D002316 ORTHO05D002280 6.4e-06 55.1 97 36.1
Haze_09346 Corylus avellana HOM05D002316 ORTHO05D002280 8.3e-06 54.7 157 27.4
Hund02243 Selenicereus undatus HOM05D002316 ORTHO05D002280 8.3e-06 54.7 107 34.6
TWI38G1868 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 8.3e-06 54.7 160 28.1


User provided reference genes

Program Settings