Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 6.8e-37 156.8 76 100.0
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 6.8e-37 156.8 76 100.0
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-36 155.2 76 98.7
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.0e-32 142.9 75 92.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.0e-32 142.9 75 92.0
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.2e-30 136.0 74 87.8
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-30 136.0 74 87.8
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.2e-28 129.4 74 83.8
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.2e-28 129.4 74 83.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 5.8e-28 127.1 75 80.0
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.7e-27 125.6 74 79.7
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.2e-27 125.2 74 81.1
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.2e-27 125.2 74 81.1
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.2e-27 125.2 74 81.1
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 8.3e-27 123.2 75 76.0
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 3.2e-26 121.3 74 81.1
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 7.0e-26 120.2 74 78.4
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.3e-24 115.9 74 73.0
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 2.3e-24 115.2 74 71.6
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-24 114.0 74 73.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 8.6e-24 113.2 74 67.6
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.1e-23 112.8 74 73.0
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 7.3e-23 110.2 74 66.2
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 7.3e-23 110.2 84 66.7
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 7.3e-23 110.2 84 66.7
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.2e-22 109.4 75 66.7
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.2e-22 109.4 74 64.9
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.6e-22 109.0 74 68.9
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 2.1e-22 108.6 74 68.9
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.8e-22 108.2 75 70.7
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.8e-22 108.2 74 63.5
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 3.6e-22 107.8 74 66.2
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 3.6e-22 107.8 74 64.9
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.7e-22 107.5 74 64.9
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 6.2e-22 107.1 75 68.0
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 6.2e-22 107.1 75 68.0
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 6.2e-22 107.1 75 68.0
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 6.2e-22 107.1 74 71.6
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.1e-21 106.3 74 66.2
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.4e-21 105.9 74 66.2
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.4e-21 105.9 75 68.0
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 2.3e-21 105.1 84 64.3
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.3e-21 105.1 74 63.5
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 4.0e-21 104.4 74 62.2
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.0e-21 104.4 74 67.6
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.0e-21 104.4 74 67.6
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 6.8e-21 103.6 75 65.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 6.8e-21 103.6 74 66.2
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 8.9e-21 103.2 76 65.8
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 8.9e-21 103.2 76 65.8
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.9e-21 103.2 74 68.9
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.9e-21 103.2 74 68.9
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 8.9e-21 103.2 73 61.6
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 8.9e-21 103.2 74 66.2
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.5e-20 102.4 75 70.7
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.0e-20 102.1 74 60.8
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.0e-20 102.1 75 64.0
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 2.6e-20 101.7 80 61.2
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.6e-20 101.7 75 64.0
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.4e-20 100.9 74 60.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 4.4e-20 100.9 74 63.5
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 5.8e-20 100.5 75 61.3
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 5.8e-20 100.5 74 60.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.3e-19 99.4 75 62.7
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-19 99.4 75 58.7
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-19 99.4 75 58.7
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.3e-19 99.4 74 62.2
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.9e-19 98.2 75 58.7
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.9e-19 98.2 75 62.7
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.9e-19 98.2 74 56.8
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.7e-19 97.8 74 63.5
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.7e-19 97.8 75 61.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 4.9e-19 97.4 74 60.8
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 6.4e-19 97.1 75 58.7
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 6.4e-19 97.1 75 64.0
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.3e-19 96.7 75 61.3
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.3e-19 96.7 75 61.3
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.1e-18 96.3 79 57.0
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.4e-18 95.9 74 59.5
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.4e-18 95.9 74 59.5
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.4e-18 95.9 76 60.5
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.4e-18 95.9 76 64.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.4e-18 95.9 76 67.1
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.4e-18 95.1 75 61.3
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.2e-18 94.7 76 67.1
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 3.2e-18 94.7 76 63.2
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.2e-18 94.7 74 56.8
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 4.1e-18 94.4 76 67.1
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.1e-18 94.4 76 67.1
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 4.1e-18 94.4 76 63.2
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 4.1e-18 94.4 75 57.3
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 5.4e-18 94.0 76 60.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 5.4e-18 94.0 75 60.0
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.1e-18 93.6 75 68.0
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.1e-18 93.6 73 61.6
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.2e-18 93.2 76 60.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.6e-17 92.4 76 63.2
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.6e-17 92.4 76 63.2
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.6e-17 92.4 74 58.1
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.6e-17 92.4 80 62.5
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-17 92.4 75 66.7
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.6e-17 92.4 114 44.7
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.0e-17 90.5 76 57.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-16 88.2 74 56.8
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 3.0e-16 88.2 77 57.1
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 3.9e-16 87.8 76 52.6
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 7.3e-15 83.6 74 52.7
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 7.3e-15 83.6 77 54.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.5e-15 83.2 76 57.9
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.6e-14 82.4 77 51.9
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.6e-14 82.4 74 51.4
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.6e-14 82.4 74 51.4
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.1e-14 82.0 75 50.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.1e-14 82.0 75 53.3
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.8e-14 81.6 75 53.3
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.8e-14 81.6 79 51.9
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 4.7e-14 80.9 78 53.8
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 4.7e-14 80.9 77 51.9
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.2e-14 80.5 75 54.7
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.4e-13 79.3 75 53.3
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.8e-13 79.0 74 50.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 3.1e-13 78.2 77 50.6
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 3.1e-13 78.2 74 51.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.2e-13 77.4 74 51.4
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.5e-12 75.9 74 54.1
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 7.6e-12 73.6 77 49.4
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 7.6e-12 73.6 70 60.0
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.9e-11 71.6 75 49.3
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 9.2e-10 66.6 107 32.7
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.1e-09 65.5 36 83.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.0e-08 63.2 35 82.9
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.3e-08 62.8 74 47.3
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.7e-06 54.3 32 71.9


User provided reference genes

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