Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34054 Brassica carinata HOM05D006925 ORTHO05D008830 2.5e-162 575.5 309 100.0
C07p33220 Brassica napus HOM05D006925 ORTHO05D008830 2.5e-162 575.5 309 100.0
BolC7t43833H Brassica oleracea HOM05D006925 ORTHO05D008830 2.5e-162 575.5 309 100.0
BraA06t27246Z Brassica rapa HOM05D006925 ORTHO05D008830 7.5e-159 563.9 312 97.8
A06p43640 Brassica napus HOM05D006925 ORTHO05D008830 2.4e-157 558.9 313 97.4
BcaC06g31233 Brassica carinata HOM05D006925 ORTHO05D008830 6.8e-152 540.8 311 96.5
Sp2g13680 Schrenkiella parvula HOM05D006925 ORTHO05D008830 2.0e-151 539.3 312 89.4
AL5G11640 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 9.2e-149 530.4 313 90.1
Aa31LG2G7670 Aethionema arabicum HOM05D006925 ORTHO05D008830 1.1e-133 480.3 312 86.5
THA.LOC104824095 Tarenaya hassleriana HOM05D006925 ORTHO05D008830 5.4e-125 451.4 261 86.6
Thhalv10004663m.g Eutrema salsugineum HOM05D006925 ORTHO05D008830 2.7e-124 449.1 269 91.8
Carub.0005s0146 Capsella rubella HOM05D006925 ORTHO05D008830 3.6e-121 438.7 222 98.6
Dinv30983 Davidia involucrata HOM05D006925 ORTHO05D008830 1.7e-115 419.9 271 76.8
Glyma.07G271000 Glycine max HOM05D006925 ORTHO05D008830 1.3e-113 413.7 278 74.1
GSVIVG01023121001 Vitis vinifera HOM05D006925 ORTHO05D008830 1.6e-113 413.3 271 76.4
Gorai.011G089700 Gossypium raimondii HOM05D006925 ORTHO05D008830 4.8e-113 411.8 271 74.5
Cfa004416 Carpinus fangiana HOM05D006925 ORTHO05D008830 1.1e-112 410.6 271 76.0
VMungo1215G1006 Vigna mungo HOM05D006925 ORTHO05D008830 2.4e-112 409.5 272 73.5
Gohir.D10G082800 Gossypium hirsutum HOM05D006925 ORTHO05D008830 3.1e-112 409.1 271 74.2
CSS0004280 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 9.0e-112 407.5 272 74.3
CSS0028149 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 9.0e-112 407.5 272 74.3
CiPaw.05G000400 Carya illinoinensis HOM05D006925 ORTHO05D008830 9.0e-112 407.5 269 74.3
Hma1.2p1_0157F.1_g069250 Hydrangea macrophylla HOM05D006925 ORTHO05D008830 9.0e-112 407.5 270 74.4
COL.COLO4_31098 Corchorus olitorius HOM05D006925 ORTHO05D008830 1.5e-111 406.8 267 75.3
QL02p103778 Quercus lobata HOM05D006925 ORTHO05D008830 2.0e-111 406.4 271 74.2
TWI14G0460 Tripterygium wilfordii HOM05D006925 ORTHO05D008830 4.5e-111 405.2 264 76.9
arahy.Tifrunner.gnm1.ann1.EDE5FN Arachis hypogaea HOM05D006925 ORTHO05D008830 1.7e-110 403.3 267 77.2
PGSC0003DMG400003436 Solanum tuberosum HOM05D006925 ORTHO05D008830 3.8e-110 402.1 274 73.4
RcHm_v2.0_Chr7g0218321 Rosa chinensis HOM05D006925 ORTHO05D008830 1.1e-109 400.6 278 73.4
Duzib160G0166 Durio zibethinus HOM05D006925 ORTHO05D008830 1.4e-109 400.2 278 71.6
MSTRG.16455 Avicennia marina HOM05D006925 ORTHO05D008830 3.2e-109 399.1 274 71.5
DCAR_004828 Daucus carota HOM05D006925 ORTHO05D008830 3.2e-109 399.1 263 74.5
Ah.02g128580 Amaranthus hybridus HOM05D006925 ORTHO05D008830 4.2e-109 398.7 278 73.7
Haze_09956 Corylus avellana HOM05D006925 ORTHO05D008830 4.2e-109 398.7 290 71.0
Migut.B00701 Erythranthe guttata HOM05D006925 ORTHO05D008830 5.4e-109 398.3 269 74.0
Sopen10g013620 Solanum pennellii HOM05D006925 ORTHO05D008830 5.4e-109 398.3 274 73.0
Sabra03G0019700 Salix brachista HOM05D006925 ORTHO05D000812 7.1e-109 397.9 276 72.5
ClCG10G007640 Citrullus lanatus HOM05D006925 ORTHO05D008830 1.2e-108 397.1 260 75.0
arahy.Tifrunner.gnm1.ann1.MTF64G Arachis hypogaea HOM05D006925 ORTHO05D008830 1.6e-108 396.7 267 76.0
HanXRQChr03g0071141 Helianthus annuus HOM05D006925 ORTHO05D008830 2.7e-108 396.0 263 76.8
Solyc10g044840.2 Solanum lycopersicum HOM05D006925 ORTHO05D008830 2.7e-108 396.0 274 72.3
CAN.G402.4 Capsicum annuum HOM05D006925 ORTHO05D008830 3.5e-108 395.6 274 73.0
Nitab4.5_0002274g0030 Nicotiana tabacum HOM05D006925 ORTHO05D008830 4.6e-108 395.2 272 73.2
ECA248G0237 Erigeron canadensis HOM05D002199 ORTHO05D007829 1.0e-107 394.0 259 76.4
Potri.003G046600 Populus trichocarpa HOM05D006925 ORTHO05D008830 1.0e-107 394.0 276 72.1
PGR042G2053 Punica granatum HOM05D006925 ORTHO05D008830 1.0e-107 394.0 274 72.6
MBI06_g17054_MAGBIO Magnolia biondii HOM05D006925 ORTHO05D008830 3.0e-107 392.5 267 71.9
FAN18G1352 Fragaria x ananassa HOM05D006925 ORTHO05D008830 5.1e-107 391.7 250 78.0
Prupe.1G587400 Prunus persica HOM05D006925 ORTHO05D008830 5.1e-107 391.7 256 76.2
Cc02_g23820 Coffea canephora HOM05D006925 ORTHO05D008830 6.7e-107 391.3 275 72.4
MD15G1445500 Malus domestica HOM05D006925 ORTHO05D008830 6.7e-107 391.3 277 72.2
unitig_8.g4519 Utricularia gibba HOM05D006925 ORTHO05D008830 6.7e-107 391.3 270 71.9
FvH4_5g27220 Fragaria vesca HOM05D006925 ORTHO05D008830 1.5e-106 390.2 250 77.6
FAN08G3037 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.5e-106 390.2 248 78.2
Aqoxy5G01835 Aquilegia oxysepala HOM05D006925 ORTHO05D008830 4.3e-106 388.7 261 72.4
Peaxi162Scf00055g00018 Petunia axillaris HOM05D006925 ORTHO05D008830 7.4e-106 387.9 291 69.1
CANSAT01G0563 Cannabis sativa HOM05D006925 ORTHO05D008830 1.3e-105 387.1 267 73.8
Lj4g0023352 Lotus japonicus HOM05D006925 ORTHO05D008830 2.8e-105 386.0 273 72.5
Lalb_Chr07g0176851 Lupinus albus HOM05D006925 ORTHO05D008830 6.2e-105 384.8 274 71.9
CDE05G0936 Ceratophyllum demersum HOM05D006925 ORTHO05D008830 1.1e-104 384.0 276 69.9
Actinidia00135 Actinidia chinensis HOM05D006925 ORTHO05D008830 1.8e-104 383.3 253 75.1
ATR1089G139 Amborella trichopoda HOM05D006925 ORTHO05D008830 3.1e-104 382.5 265 70.9
CsaV3_3G006780 Cucumis sativus L. HOM05D006925 ORTHO05D008830 1.5e-103 380.2 250 73.6
PSO210G4845 Papaver somniferum HOM05D006925 ORTHO05D008830 1.3e-102 377.1 266 71.1
Lsat_1_v5_gn_7_69720 Lactuca sativa HOM05D006925 ORTHO05D008830 2.1e-100 369.8 295 66.8
Nn5g27113 Nelumbo nucifera HOM05D006925 ORTHO05D008830 3.3e-98 362.5 230 76.5
Gohir.A10G068400 Gossypium hirsutum HOM05D006925 ORTHO05D008830 4.8e-97 358.6 238 73.1
Medtr4g134410 Medicago truncatula HOM05D006925 ORTHO05D008830 8.2e-97 357.8 256 70.7
FAN13G1230 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.4e-96 357.1 268 69.4
Thecc.06G062200 Theobroma cacao HOM05D006925 ORTHO05D008830 2.1e-92 343.2 232 73.7
Phvul.003G090400 Phaseolus vulgaris HOM05D006925 ORTHO05D008830 3.0e-91 339.3 222 73.0
AT2G02410 Arabidopsis thaliana HOM05D006925 ORTHO05D008830 3.9e-91 339.0 248 75.8
CARHR144990 Cardamine hirsuta HOM05D006925 ORTHO05D008830 1.1e-90 337.4 221 88.2
Nitab4.5_0000288g0050 Nicotiana tabacum HOM05D006925 ORTHO05D008830 1.1e-90 337.4 274 64.6
HPP92_001204 Vanilla planifolia HOM05D006925 ORTHO05D008830 7.4e-90 334.7 259 65.3
SGA_v2.0_scaffold254G45226 Striga asiatica HOM05D006925 ORTHO05D008830 9.7e-90 334.3 335 54.0
Eucgr.G00053 Eucalyptus grandis HOM05D006925 ORTHO05D008830 1.6e-89 333.6 228 74.6
Sc03g0005610 Simmondsia chinensis HOM05D006925 ORTHO05D008830 1.2e-87 327.4 229 70.3
Psat4g001760 Pisum sativum HOM05D006925 ORTHO05D008830 5.9e-87 325.1 261 61.3
Ca_13518_v3 Cicer arietinum L. HOM05D006925 ORTHO05D008830 1.4e-85 320.5 217 72.8
Sed0012673 Sechium edule HOM05D006925 ORTHO05D008830 6.1e-84 315.1 209 73.2
Manes.06G015100 Manihot esculenta HOM05D006925 ORTHO05D008830 2.5e-82 309.7 211 71.6
AUR62032491 Chenopodium quinoa HOM05D006925 ORTHO05D008830 5.3e-80 302.0 200 74.0
Lj5A307T31 Lonicera japonica HOM05D006925 ORTHO05D008830 9.1e-80 301.2 264 58.7
EL10Ac6g13952 Beta vulgaris HOM05D006925 ORTHO05D008830 1.3e-78 297.4 269 59.1
Mapoly0001s0380 Marchantia polymorpha HOM05D006925 ORTHO05D008830 1.1e-77 294.3 272 57.7
AUR62040119 Chenopodium quinoa HOM05D006925 ORTHO05D008830 1.4e-75 287.3 306 53.3
MELO3C016443.2 Cucumis melo HOM05D006925 ORTHO05D008830 1.1e-74 284.3 166 79.5
Pp3c9_8480 Physcomitrium patens HOM05D006925 ORTHO05D008830 1.5e-74 283.9 270 55.6
Pp3c15_4340 Physcomitrium patens HOM05D006925 ORTHO05D008830 3.3e-74 282.7 267 54.3
Hund15314 Selenicereus undatus HOM05D006925 ORTHO05D008830 5.7e-74 282.0 210 68.6
SMO358G0233 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 6.7e-67 258.5 250 53.6
vmacro01630 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 3.3e-66 256.1 212 61.8
TAR628G1169 Trochodendron aralioides HOM05D006925 ORTHO05D008830 2.8e-65 253.1 174 69.5
TPR.G5931 Trifolium pratense HOM05D006925 ORTHO05D008830 3.7e-65 252.7 232 56.9
Zm00001eb064090 Zea mays HOM05D006925 ORTHO05D008830 8.5e-62 241.5 182 64.8
AagrBONN_evm.TU.Sc2ySwM_369.585 Anthoceros agrestis HOM05D006925 ORTHO05D008830 7.2e-61 238.4 226 54.4
SEGI_06138 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 2.8e-57 226.5 273 46.2
Rhsim11G0114700 Rhododendron simsii HOM05D006925 ORTHO05D008830 1.1e-45 188.0 254 45.7
Sabra03G0019900 Salix brachista HOM05D006925 ORTHO05D008830 9.5e-45 184.9 148 64.2
AL5G11650 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 4.7e-44 182.6 94 97.9
Ciclev10003645m.g Citrus clementina HOM05D006925 ORTHO05D008830 6.1e-44 182.2 132 68.2
Glyma.17G002900 Glycine max HOM05D006925 ORTHO05D008830 1.5e-34 151.0 92 81.5
Os03g0843200 Oryza sativa ssp. japonica HOM05D006925 ORTHO05D008830 3.9e-30 136.3 107 61.7
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.3e-25 121.3 98 55.1
CBR_g49407 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-21 106.7 121 47.9
SEGI_30664 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 8.1e-20 102.1 142 43.7
Oeu016657.1 Olea europaea HOM05D006925 ORTHO05D008830 2.0e-18 97.4 60 81.7
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.0e-18 97.4 98 49.0
Oeu016658.1 Olea europaea HOM05D006925 ORTHO05D008830 2.6e-18 97.1 84 58.3
TAR628G1563 Trochodendron aralioides HOM05D006925 ORTHO05D008830 4.4e-18 96.3 56 80.4
PRCOL_00002508 Prasinoderma coloniale HOM05D006925 ORTHO05D008830 7.3e-13 79.0 218 29.4
EL10Ac6g13953 Beta vulgaris HOM05D006925 ORTHO05D008830 8.9e-11 72.0 51 68.6
CBR_g46374 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-09 67.0 47 63.8
Glyma.20G064100 Glycine max HOM05D006925 ORTHO05D008830 6.4e-09 65.9 41 70.7
MCO01G431 Micromonas commoda HOM05D006925 ORTHO05D008830 5.4e-08 62.8 238 26.5
Ciclev10003790m.g Citrus clementina HOM05D006925 ORTHO05D008830 7.1e-08 62.4 35 88.6
vmacro01629 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 7.8e-07 58.9 54 53.7


User provided reference genes

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