Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 2.0e-124 449.1 234 100.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.3e-118 429.9 225 99.6
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.1e-106 390.2 227 90.7
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.2e-100 370.2 258 79.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 4.6e-92 341.7 225 82.7
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-90 337.0 228 79.8
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 2.1e-81 306.2 235 71.5
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 2.8e-81 305.8 244 68.9
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 3.6e-81 305.4 243 68.3
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 8.1e-81 304.3 244 68.9
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 8.1e-81 304.3 244 68.9
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 8.1e-81 304.3 244 68.9
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 8.1e-81 304.3 244 68.9
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 7.6e-79 297.7 239 67.8
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 6.4e-78 294.7 237 68.4
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 4.2e-77 292.0 238 66.8
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 9.3e-77 290.8 244 65.6
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.6e-76 290.0 238 67.2
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.3e-75 286.2 234 67.1
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.0e-71 273.1 241 62.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 4.2e-69 265.4 214 64.5
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.2e-68 263.8 214 64.0
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.8e-67 260.0 212 63.2
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 5.1e-67 258.5 222 63.1
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 8.7e-67 257.7 233 61.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.9e-66 256.5 218 63.8
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.5e-66 256.1 227 61.2
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.5e-66 256.1 222 62.2
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 7.4e-66 254.6 209 65.6
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 9.6e-66 254.2 213 64.8
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 2.1e-65 253.1 222 62.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 3.7e-65 252.3 209 64.6
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 4.8e-65 251.9 239 58.6
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 8.1e-65 251.1 222 60.8
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.4e-64 250.4 229 60.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 1.4e-64 250.4 234 59.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 3.1e-64 249.2 220 61.4
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 4.0e-64 248.8 244 56.6
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 4.0e-64 248.8 210 62.4
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 4.0e-64 248.8 222 60.8
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.3e-64 248.4 222 58.6
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.3e-64 248.4 222 58.6
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 5.3e-64 248.4 239 58.6
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 6.9e-64 248.1 222 60.8
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 9.0e-64 247.7 244 56.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.5e-63 246.9 244 56.1
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.5e-63 246.9 213 62.0
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.0e-63 246.5 213 62.9
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.0e-63 246.5 211 62.6
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 4.5e-63 245.4 211 64.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 5.8e-63 245.0 216 63.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 7.6e-63 244.6 207 63.3
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 7.6e-63 244.6 213 60.6
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 2.9e-62 242.7 243 56.0
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.8e-62 242.3 223 59.6
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 3.8e-62 242.3 231 58.0
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 4.9e-62 241.9 235 59.1
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 4.9e-62 241.9 224 59.8
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 6.5e-62 241.5 215 59.5
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 6.5e-62 241.5 224 59.8
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.1e-61 240.7 236 57.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.1e-61 240.7 211 63.0
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.9e-61 240.0 221 59.3
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.9e-61 240.0 234 57.7
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.9e-61 240.0 215 61.9
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 2.5e-61 239.6 220 58.2
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 5.5e-61 238.4 216 60.6
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 7.1e-61 238.0 215 61.4
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 7.1e-61 238.0 218 60.6
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 9.3e-61 237.7 215 60.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 1.2e-60 237.3 215 61.4
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.1e-60 236.5 232 56.9
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.7e-60 236.1 215 59.1
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 7.9e-60 234.6 211 58.8
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.0e-59 234.2 211 60.7
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.3e-59 233.8 213 58.2
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.8e-59 233.4 213 58.7
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.8e-59 233.4 232 55.6
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 1.8e-59 233.4 217 59.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.3e-59 233.0 249 55.0
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.3e-59 233.0 211 58.3
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 3.0e-59 232.6 242 53.7
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.9e-59 232.3 215 60.5
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.1e-58 230.7 237 54.0
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 4.3e-58 228.8 199 62.3
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 5.7e-58 228.4 233 54.9
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.6e-57 226.9 219 55.3
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 2.1e-57 226.5 229 57.2
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.1e-57 226.5 222 55.9
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 3.7e-57 225.7 216 57.9
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 3.7e-57 225.7 213 59.2
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 4.8e-57 225.3 213 58.2
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 8.2e-57 224.6 229 56.3
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.1e-56 224.2 251 53.4
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.4e-56 223.0 226 54.9
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 4.5e-55 218.8 229 55.9
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 5.9e-55 218.4 224 53.1
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 3.8e-54 215.7 242 50.8
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 5.0e-54 215.3 236 52.1
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.9e-53 213.4 213 55.4
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.5e-53 213.0 207 57.0
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.2e-53 212.6 239 51.5
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.2e-52 210.7 218 55.0
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.7e-52 209.5 207 56.0
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 6.7e-51 204.9 201 59.2
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 8.2e-49 198.0 174 59.8
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.6e-47 193.0 173 59.5
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 4.5e-47 192.2 210 49.5
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.9e-46 189.5 172 60.5
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 1.2e-44 184.1 165 60.6
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.9e-38 162.9 228 44.3
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.9e-37 160.2 218 42.2
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 4.2e-37 159.1 220 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.0e-35 154.5 207 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 5.2e-35 152.1 206 42.2
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.7e-33 146.0 229 41.9
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 2.4e-32 143.3 206 39.3
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 6.5e-30 135.2 110 67.3
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.0e-27 127.9 126 56.3
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.7e-22 110.5 120 53.3
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.9e-21 107.1 100 60.0
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 2.8e-17 93.2 88 60.2
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 7.0e-16 88.6 66 59.1
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 6.8e-11 72.0 85 42.4
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 7.5e-10 68.6 70 52.9
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.2e-09 67.0 39 82.1
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.2e-09 67.0 39 82.1
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.2e-09 67.0 39 82.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 8.3e-09 65.1 135 37.8
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 2.7e-07 60.1 159 34.0
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-06 57.4 44 63.6
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.3e-06 57.0 40 67.5
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.9e-06 56.6 85 47.1
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.9e-06 56.6 85 47.1
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.9e-06 56.6 85 47.1
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 8.6e-06 55.1 50 58.0


User provided reference genes

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