Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 7.0e-187 657.1 330 100.0
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 4.2e-184 647.9 332 99.4
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 1.2e-183 646.4 332 99.1
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 6.7e-182 640.6 332 98.2
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 4.8e-172 607.8 333 94.0
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 2.7e-170 602.1 330 91.2
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 3.5e-170 601.7 332 92.5
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 1.1e-163 580.1 332 88.6
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.6e-162 576.2 332 87.0
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.6e-162 576.2 332 87.0
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 1.6e-162 576.2 331 87.9
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 1.7e-161 572.8 332 85.8
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 2.3e-153 545.8 343 81.9
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 8.0e-151 537.3 285 97.2
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 4.9e-140 501.5 333 78.1
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 1.4e-123 446.8 333 70.3
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 1.4e-123 446.8 334 71.3
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 7.1e-123 444.5 335 70.4
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 1.6e-122 443.4 342 69.6
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 1.5e-120 436.8 332 69.3
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 1.5e-120 436.8 341 66.9
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 5.6e-120 434.9 335 68.4
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 1.3e-119 433.7 333 69.1
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 1.3e-119 433.7 338 68.9
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 2.8e-119 432.6 333 68.5
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 8.1e-119 431.0 333 68.2
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.4e-118 430.3 332 68.7
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 4.0e-118 428.7 338 66.6
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 9.0e-118 427.6 336 68.5
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 1.2e-117 427.2 340 67.4
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 2.6e-117 426.0 334 67.7
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 2.6e-117 426.0 334 66.8
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 5.8e-117 424.9 340 67.1
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.7e-116 423.3 341 65.7
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.8e-116 422.2 332 67.5
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 3.8e-116 422.2 274 78.1
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 4.9e-116 421.8 336 67.3
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 8.4e-116 421.0 328 66.8
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 3.2e-115 419.1 341 65.4
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 9.3e-115 417.5 334 66.2
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 9.3e-115 417.5 343 65.9
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.6e-114 416.8 336 64.6
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 2.1e-114 416.4 338 65.4
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 7.8e-114 414.5 272 76.1
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 1.3e-113 413.7 339 63.7
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 1.7e-113 413.3 333 64.9
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 3.0e-113 412.5 338 63.9
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 3.0e-113 412.5 338 63.9
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 5.1e-113 411.8 341 63.6
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 6.6e-113 411.4 286 72.0
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 1.1e-112 410.6 272 74.3
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 1.9e-112 409.8 282 71.3
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 2.5e-112 409.5 336 65.5
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 7.3e-112 407.9 272 73.5
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 1.6e-111 406.8 335 63.3
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.8e-111 406.0 332 66.6
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 3.6e-111 405.6 342 63.7
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 8.1e-111 404.4 321 64.5
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 1.4e-110 403.7 272 72.1
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 3.1e-110 402.5 271 72.7
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.2e-109 400.6 341 61.9
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.2e-109 400.6 375 58.7
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 3.4e-109 399.1 338 62.7
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 2.2e-108 396.4 327 63.6
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 4.9e-108 395.2 323 62.8
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.4e-107 393.7 332 63.9
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 1.4e-107 393.7 340 60.9
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.9e-107 393.3 290 70.3
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 3.2e-107 392.5 342 62.0
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 5.4e-107 391.7 258 75.6
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 9.3e-107 391.0 336 62.5
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 1.6e-106 390.2 373 59.2
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 2.3e-105 386.3 286 68.5
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 1.5e-104 383.6 268 69.8
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 3.3e-104 382.5 335 61.8
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 5.6e-104 381.7 336 61.6
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 2.8e-103 379.4 346 60.4
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 3.7e-103 379.0 271 67.9
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 4.0e-102 375.6 353 58.9
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 1.2e-101 374.0 364 55.8
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 4.9e-100 368.6 293 65.2
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.1e-99 367.5 272 67.6
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 2.5e-99 366.3 308 61.4
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 2.1e-98 363.2 336 62.5
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.5e-96 357.1 294 62.9
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 5.7e-96 355.1 332 59.0
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 3.7e-95 352.4 323 56.7
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.4e-94 350.5 288 67.7
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 5.8e-93 345.1 271 63.5
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 9.3e-91 337.8 226 74.3
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 1.6e-90 337.0 346 54.6
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 6.1e-90 335.1 290 61.0
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 2.3e-89 333.2 275 67.3
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 9.7e-88 327.8 274 64.6
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 1.7e-84 317.0 248 61.7
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 8.5e-84 314.7 232 68.5
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 5.5e-83 312.0 272 62.9
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 3.6e-82 309.3 252 59.5
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 6.7e-81 305.1 272 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.4e-75 287.3 290 49.7
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 6.3e-71 271.9 230 66.1
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 3.8e-68 262.7 222 63.5
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.9e-67 260.4 304 48.7
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.3e-64 249.6 201 73.1
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 4.8e-63 245.7 217 55.8
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 8.2e-63 245.0 259 49.4
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.6e-61 240.7 156 79.5
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 2.6e-56 223.4 217 60.4
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 6.3e-55 218.8 154 77.3
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 2.0e-53 213.8 229 55.5
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 4.5e-53 212.6 229 55.5
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 8.3e-47 191.8 233 47.6
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 4.1e-46 189.5 215 52.1
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 4.2e-43 179.5 266 40.6
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 6.3e-39 165.6 254 36.2
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 9.5e-19 98.6 159 36.5
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 1.2e-18 98.2 58 77.6
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 8.4e-15 85.5 63 61.9
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 2.1e-10 70.9 46 69.6
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 5.8e-08 62.8 98 39.8
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 4.9e-07 59.7 70 38.6


User provided reference genes

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