Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33995 Brassica carinata HOM05D000108 ORTHO05D014103 2.8e-77 292.0 155 100.0
C07p33910 Brassica napus HOM05D000108 ORTHO05D014103 2.8e-77 292.0 155 100.0
C02p25070 Brassica napus HOM05D000108 ORTHO05D014103 2.3e-76 288.9 155 99.4
BolC7t43905H Brassica oleracea HOM05D000108 ORTHO05D014103 2.9e-74 282.0 152 98.7
BcaC02g07526 Brassica carinata HOM05D000108 ORTHO05D001149 2.3e-63 245.7 152 85.5
BraA04t18334Z Brassica rapa HOM05D000108 ORTHO05D001149 5.1e-63 244.6 152 85.5
BcaB06g28989 Brassica carinata HOM05D000108 ORTHO05D001149 8.6e-63 243.8 152 85.5
C04p65890 Brassica napus HOM05D000108 ORTHO05D001149 5.6e-62 241.1 152 83.6
A04p28560 Brassica napus HOM05D000108 ORTHO05D001149 2.8e-61 238.8 153 84.3
BolC4t28093H Brassica oleracea HOM05D000108 ORTHO05D001149 1.4e-60 236.5 152 82.2
Sp4g19760 Schrenkiella parvula HOM05D000108 ORTHO05D001149 3.1e-60 235.3 152 82.9
C09p31480 Brassica napus HOM05D000108 ORTHO05D014103 2.0e-59 232.6 155 83.2
BolC9t56007H Brassica oleracea HOM05D000108 ORTHO05D014103 2.0e-59 232.6 155 83.2
C09p40020 Brassica napus HOM05D000108 ORTHO05D014103 2.2e-58 229.2 155 82.6
BolC9t56899H Brassica oleracea HOM05D000108 ORTHO05D014103 2.2e-58 229.2 155 82.6
BcaC04g21465 Brassica carinata HOM05D000108 ORTHO05D014103 9.2e-57 223.8 151 82.8
BcaC04g20709 Brassica carinata HOM05D000108 ORTHO05D014103 1.0e-55 220.3 151 82.1
Carub.0004s1934 Capsella rubella HOM05D000108 ORTHO05D001149 1.3e-55 219.9 152 77.0
Thhalv10016170m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.1e-52 210.3 152 73.7
AL4G33810 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 1.4e-52 209.9 151 75.5
AT2G37420 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 3.1e-52 208.8 150 74.7
CARHR132170 Cardamine hirsuta HOM05D000108 ORTHO05D001149 9.9e-51 203.8 154 70.8
BcaC02g08397 Brassica carinata HOM05D000108 ORTHO05D014103 3.4e-43 178.7 152 67.8
BcaB04g19587 Brassica carinata HOM05D000108 ORTHO05D014103 7.1e-41 171.0 114 82.5
Aa31LG5G22850 Aethionema arabicum HOM05D000108 ORTHO05D001149 5.1e-39 164.9 152 59.9
THA.LOC104806586 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 1.6e-32 143.3 150 53.3
Thecc.05G045800 Theobroma cacao HOM05D000108 ORTHO05D001149 2.7e-24 115.9 156 42.3
Dinv35646 Davidia involucrata HOM05D000108 ORTHO05D001149 7.4e-22 107.8 155 41.9
BcaC02g07525 Brassica carinata HOM05D000108 ORTHO05D014103 1.3e-21 107.1 106 59.4
CsaV3_4G024680 Cucumis sativus L. HOM05D000108 ORTHO05D001149 1.6e-21 106.7 153 43.1
MELO3C003101.2 Cucumis melo HOM05D000108 ORTHO05D001149 2.1e-21 106.3 155 45.2
Duzib106G1757 Durio zibethinus HOM05D000108 ORTHO05D001149 2.1e-21 106.3 163 38.0
QL07p046713 Quercus lobata HOM05D000108 ORTHO05D001149 4.8e-21 105.1 145 44.1
Manes.08G076715 Manihot esculenta HOM05D000108 ORTHO05D001149 6.2e-21 104.8 156 39.7
Gohir.A04G079500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 8.2e-21 104.4 163 37.4
Ciclev10010956m.g Citrus clementina HOM05D000108 ORTHO05D001149 1.8e-20 103.2 156 41.0
Atru.chr8.1922 Acer truncatum HOM05D000108 ORTHO05D001149 1.2e-19 100.5 155 36.1
Cfa017438 Carpinus fangiana HOM05D000108 ORTHO05D001149 1.5e-19 100.1 152 40.8
Gorai.009G423900 Gossypium raimondii HOM05D000108 ORTHO05D001149 1.5e-19 100.1 162 37.0
Haze_20725 Corylus avellana HOM05D000108 ORTHO05D001149 3.4e-19 99.0 126 44.4
CiPaw.09G187900 Carya illinoinensis HOM05D000108 ORTHO05D001149 1.0e-18 97.4 153 41.2
Potri.006G082900 Populus trichocarpa HOM05D000108 ORTHO05D001149 2.9e-18 95.9 165 40.6
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 3.8e-18 95.5 156 41.0
Migut.J00371 Erythranthe guttata HOM05D000108 ORTHO05D001149 5.0e-18 95.1 150 40.0
Sed0024726 Sechium edule HOM05D000108 ORTHO05D001149 6.5e-18 94.7 142 41.5
Eucgr.K03170 Eucalyptus grandis HOM05D000108 ORTHO05D001149 8.4e-18 94.4 157 39.5
TWI74G1599 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 8.4e-18 94.4 161 38.5
VMungo0720G0253 Vigna mungo HOM05D000108 ORTHO05D001149 8.4e-18 94.4 145 42.8
Lj5g0001196 Lotus japonicus HOM05D000108 ORTHO05D001149 1.4e-17 93.6 151 37.1
Psat6g068920 Pisum sativum HOM05D000108 ORTHO05D001149 9.3e-17 90.9 149 40.9
SGA_v2.0_scaffold126G33836 Striga asiatica HOM05D000108 ORTHO05D001149 9.3e-17 90.9 147 40.8
Lju41C55G1 Lonicera japonica HOM05D000108 ORTHO05D001149 1.6e-16 90.1 128 42.2
PGR004G0532 Punica granatum HOM05D000108 ORTHO05D001149 3.5e-16 89.0 159 36.5
MSTRG.5691 Avicennia marina HOM05D000108 ORTHO05D001149 7.9e-16 87.8 153 36.6
Oeu059991.1 Olea europaea HOM05D000108 ORTHO05D001149 7.9e-16 87.8 109 44.0
Phvul.007G159100 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 7.9e-16 87.8 148 39.2
PSO339G4855 Papaver somniferum HOM05D000108 ORTHO05D001149 1.3e-15 87.0 158 38.6
Sed0000666 Sechium edule HOM05D000108 ORTHO05D001149 1.8e-15 86.7 148 40.5
CSS0011697 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 2.3e-15 86.3 152 36.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.3e-15 86.3 152 36.8
PSO648G0020 Papaver somniferum HOM05D000108 ORTHO05D001149 2.3e-15 86.3 158 37.3
GSVIVG01025610001 Vitis vinifera HOM05D000108 ORTHO05D001149 3.9e-15 85.5 155 36.1
Sabra06G0062600 Salix brachista HOM05D000108 ORTHO05D001149 6.7e-15 84.7 161 37.3
Nitab4.5_0000349g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001149 8.7e-15 84.3 146 36.3
TAR623G0060 Trochodendron aralioides HOM05D000108 ORTHO05D001149 8.7e-15 84.3 155 37.4
Glyma.10G045500 Glycine max HOM05D000108 ORTHO05D001149 1.1e-14 84.0 147 40.8
Rhsim05G0187400 Rhododendron simsii HOM05D000108 ORTHO05D001149 1.1e-14 84.0 147 38.8
Glyma.13G133200 Glycine max HOM05D000108 ORTHO05D001149 1.5e-14 83.6 145 39.3
Prupe.6G249200 Prunus persica HOM05D000108 ORTHO05D001149 1.5e-14 83.6 146 39.0
Nitab4.5_0000527g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.9e-14 83.2 146 35.6
vmacro20116 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 2.5e-14 82.8 147 35.4
Ca_09598_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 4.3e-14 82.0 145 37.9
DCAR_009257 Daucus carota HOM05D000108 ORTHO05D001149 4.3e-14 82.0 146 39.0
Medtr1g067630 Medicago truncatula HOM05D000108 ORTHO05D001149 4.3e-14 82.0 145 37.2
PGSC0003DMG400019214 Solanum tuberosum HOM05D000108 ORTHO05D001149 9.7e-14 80.9 146 35.6
RcHm_v2.0_Chr3g0467551 Rosa chinensis HOM05D000108 ORTHO05D001149 1.3e-13 80.5 145 38.6
MD12G1136800 Malus domestica HOM05D000108 ORTHO05D001149 1.6e-13 80.1 146 37.7
Sopen10g035720 Solanum pennellii HOM05D000108 ORTHO05D001149 3.7e-13 79.0 144 35.4
FvH4_6g14420 Fragaria vesca HOM05D000108 ORTHO05D001149 4.8e-13 78.6 148 39.2
CAN.G501.10 Capsicum annuum HOM05D000108 ORTHO05D001149 6.3e-13 78.2 146 34.2
Solyc10g086340.1 Solanum lycopersicum HOM05D000108 ORTHO05D001149 6.3e-13 78.2 144 35.4
MD04G1119500 Malus domestica HOM05D000108 ORTHO05D001149 8.2e-13 77.8 146 37.0
Cc06_g03060 Coffea canephora HOM05D000108 ORTHO05D001149 1.1e-12 77.4 155 32.9
FAN05G0640 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.4e-12 77.0 148 37.8
FAN09G1966 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.8e-12 76.6 148 38.5
HanXRQChr01g0026581 Helianthus annuus HOM05D000108 ORTHO05D001149 2.4e-12 76.3 157 38.2
FAN02G2463 Fragaria x ananassa HOM05D000108 ORTHO05D001149 3.1e-12 75.9 144 38.2
Lalb_Chr02g0153221 Lupinus albus HOM05D000108 ORTHO05D001149 3.1e-12 75.9 152 34.2
Peaxi162Scf00407g00069 Petunia axillaris HOM05D000108 ORTHO05D001149 1.2e-11 73.9 147 32.0
COL.COLO4_14867 Corchorus olitorius HOM05D000108 ORTHO05D014103 2.0e-11 73.2 111 40.5
ECA248G3979 Erigeron canadensis HOM05D000108 ORTHO05D001149 3.4e-11 72.4 162 35.8
BcaB06g26258 Brassica carinata HOM05D000108 ORTHO05D014103 1.0e-10 70.9 58 69.0
arahy.Tifrunner.gnm1.ann1.V9SGYL Arachis hypogaea HOM05D000108 ORTHO05D001149 1.3e-10 70.5 154 34.4
Sc01g0003930 Simmondsia chinensis HOM05D000108 ORTHO05D001149 1.3e-10 70.5 136 39.0
Nn2g10475 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.7e-10 70.1 155 31.0
Aqoxy2G02005 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 2.5e-09 66.2 157 32.5
Lsat_1_v5_gn_1_55921 Lactuca sativa HOM05D000108 ORTHO05D001149 4.2e-09 65.5 156 34.6
ATR1152G079 Amborella trichopoda HOM05D000108 ORTHO05D001149 2.7e-08 62.8 150 30.7
arahy.Tifrunner.gnm1.ann1.V43IMF Arachis hypogaea HOM05D000108 ORTHO05D001149 1.4e-07 60.5 123 35.0
EL10Ac7g15934 Beta vulgaris HOM05D000108 ORTHO05D001149 1.1e-06 57.4 137 29.2
AUR62042976 Chenopodium quinoa HOM05D000108 ORTHO05D001149 2.0e-06 56.6 109 33.9
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 2.5e-06 56.2 153 24.2
TPR.G23077 Trifolium pratense HOM05D000108 ORTHO05D001149 4.3e-06 55.5 83 36.1
AUR62001858 Chenopodium quinoa HOM05D000108 ORTHO05D001149 5.7e-06 55.1 158 28.5
Aa31LG5G7600 Aethionema arabicum HOM05D000108 ORTHO05D001149 9.7e-06 54.3 154 25.3
Carub.0004s0959 Capsella rubella HOM05D000108 ORTHO05D001149 9.7e-06 54.3 158 26.6
AUR62009653 Chenopodium quinoa HOM05D000108 ORTHO05D001149 9.7e-06 54.3 158 27.8
ClCG04G008470 Citrullus lanatus HOM05D000108 ORTHO05D001149 9.7e-06 54.3 111 33.3


User provided reference genes

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