Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 4.2e-92 341.3 166 100.0
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 5.2e-90 334.3 166 98.2
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 5.7e-89 330.9 166 97.6
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 4.7e-83 311.2 155 97.4
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.8e-81 304.3 167 88.6
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.1e-74 282.0 166 83.1
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 9.8e-73 276.9 156 87.2
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-72 276.2 156 85.9
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 2.2e-72 275.8 152 88.8
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 4.9e-72 274.6 157 86.6
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 4.9e-72 274.6 163 81.6
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 4.9e-72 274.6 163 81.6
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 4.9e-72 274.6 163 81.6
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 8.1e-67 257.3 159 79.2
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 1.4e-66 256.5 164 77.4
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 2.3e-66 255.8 155 80.0
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 6.2e-59 231.1 142 78.9
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 3.3e-52 208.8 101 98.0
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 7.3e-44 181.0 151 60.9
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 9.3e-23 110.9 115 50.4
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 1.0e-21 107.5 159 44.0
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.3e-21 107.1 159 43.4
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 5.1e-21 105.1 148 45.9
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 1.9e-20 103.2 154 43.5
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.5e-20 102.8 144 46.5
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 3.3e-20 102.4 119 46.2
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 3.3e-20 102.4 149 43.0
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 9.7e-20 100.9 148 44.6
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 1.3e-19 100.5 141 44.0
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.6e-19 100.1 160 40.6
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 4.8e-19 98.6 129 46.5
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 6.3e-19 98.2 127 47.2
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 8.2e-19 97.8 131 42.7
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 2.4e-18 96.3 150 40.7
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 2.4e-18 96.3 151 44.4
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 3.1e-18 95.9 137 40.9
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 3.1e-18 95.9 151 41.7
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 4.1e-18 95.5 152 40.8
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 9.0e-18 94.4 118 48.3
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-17 94.0 160 40.6
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-17 94.0 141 44.0
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.5e-17 93.6 131 42.7
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 2.0e-17 93.2 172 34.9
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 2.6e-17 92.8 132 39.4
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 2.6e-17 92.8 153 38.6
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 3.4e-17 92.4 161 40.4
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.4e-17 92.4 144 43.1
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 5.9e-17 91.7 165 40.0
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 5.9e-17 91.7 124 45.2
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 5.9e-17 91.7 153 37.9
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 6.5e-16 88.2 121 43.8
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 1.1e-15 87.4 125 43.2
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 1.4e-15 87.0 156 37.8
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 1.9e-15 86.7 144 36.1
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.5e-15 86.3 125 40.8
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.2e-15 85.9 116 37.9
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 7.2e-15 84.7 111 41.4
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 9.4e-15 84.3 121 44.6
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 2.1e-14 83.2 151 38.4
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-14 82.8 115 41.7
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 4.6e-14 82.0 122 42.6
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 4.6e-14 82.0 118 42.4
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 6.1e-14 81.6 129 39.5
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 6.1e-14 81.6 129 39.5
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 1.0e-13 80.9 138 37.0
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 1.4e-13 80.5 115 40.9
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 1.4e-13 80.5 165 30.3
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 1.4e-13 80.5 115 40.9
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 1.8e-13 80.1 165 29.7
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 1.8e-13 80.1 165 29.7
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 2.3e-13 79.7 114 37.7
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 3.0e-13 79.3 112 39.3
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 3.0e-13 79.3 112 39.3
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 5.1e-13 78.6 154 32.5
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 5.1e-13 78.6 115 40.9
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.1e-13 78.6 155 33.5
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 5.1e-13 78.6 175 36.6
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 1.5e-12 77.0 113 40.7
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.0e-12 76.6 117 36.8
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.0e-12 76.6 115 40.9
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.3e-12 75.9 115 38.3
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.3e-12 75.9 114 40.4
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 4.3e-12 75.5 111 34.2
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 4.3e-12 75.5 123 39.0
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 5.7e-12 75.1 111 37.8
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 7.4e-12 74.7 111 37.8
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 7.4e-12 74.7 157 31.8
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 7.4e-12 74.7 157 31.8
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 7.4e-12 74.7 149 38.3
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 9.7e-12 74.3 126 35.7
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 1.3e-11 73.9 116 37.9
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.7e-11 73.6 115 39.1
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 1.7e-11 73.6 115 39.1
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.7e-11 73.6 140 34.3
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 2.2e-11 73.2 132 35.6
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 3.4e-09 65.9 114 38.6
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 4.5e-09 65.5 119 35.3
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 4.5e-09 65.5 144 28.5
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 5.9e-09 65.1 83 41.0
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.3e-08 63.9 133 32.3
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 8.5e-08 61.2 130 31.5
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.1e-07 60.8 124 35.5
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 3.2e-07 59.3 43 58.1
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 1.2e-06 57.4 110 33.6
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 2.7e-06 56.2 119 34.5
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 4.7e-06 55.5 115 33.9
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 4.7e-06 55.5 117 35.0


User provided reference genes

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