Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.5e-49 199.1 96 100.0
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-42 176.0 111 82.9
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.4e-33 144.8 68 100.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.7e-30 135.2 92 77.2
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.7e-30 135.2 92 77.2
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.7e-30 135.2 92 77.2
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.7e-30 135.2 92 77.2
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.7e-30 135.2 92 77.2
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.7e-30 135.2 92 77.2
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 3.5e-30 134.8 92 76.1
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 7.8e-30 133.7 92 75.0
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 7.8e-30 133.7 92 75.0
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 7.8e-30 133.7 92 75.0
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.0e-29 133.3 92 75.0
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.0e-29 133.3 92 75.0
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.0e-29 133.3 92 73.9
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.0e-29 133.3 92 73.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.3e-29 132.9 92 72.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.3e-29 132.9 92 72.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.3e-29 132.9 92 75.0
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.3e-29 132.9 92 72.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.3e-29 132.1 92 73.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.3e-29 132.1 92 72.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.3e-29 132.1 92 72.8
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-29 132.1 92 72.8
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 3.0e-29 131.7 92 75.0
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 72.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 73.9
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 73.9
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 73.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 72.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 71.7
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 72.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 3.9e-29 131.3 92 72.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 71.7
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.0e-29 131.0 92 72.8
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 6.6e-29 130.6 92 72.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.6e-29 130.6 92 71.7
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 6.6e-29 130.6 92 71.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 6.6e-29 130.6 92 71.7
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 6.6e-29 130.6 92 72.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 8.6e-29 130.2 93 72.0
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 8.6e-29 130.2 93 72.0
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.6e-29 130.2 92 71.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.6e-29 130.2 92 71.7
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 8.6e-29 130.2 92 72.8
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 8.6e-29 130.2 92 71.7
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-28 129.8 92 72.8
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.1e-28 129.8 92 71.7
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.1e-28 129.8 92 71.7
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.5e-28 129.4 92 71.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-28 129.4 92 71.7
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-28 129.4 92 71.7
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.5e-28 129.4 92 71.7
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.9e-28 129.0 92 71.7
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.9e-28 129.0 92 71.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 2.5e-28 128.6 92 70.7
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.5e-28 128.6 93 73.1
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-28 128.6 92 72.8
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.5e-28 128.6 93 73.1
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.3e-28 128.3 92 70.7
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.3e-28 127.9 92 70.7
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 4.3e-28 127.9 92 71.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 4.3e-28 127.9 92 71.7
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 4.3e-28 127.9 92 71.7
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 4.3e-28 127.9 92 70.7
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.3e-28 127.9 92 69.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 5.6e-28 127.5 92 70.7
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 7.3e-28 127.1 92 70.7
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 7.3e-28 127.1 91 71.4
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 9.5e-28 126.7 92 69.6
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 9.5e-28 126.7 91 71.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.2e-27 126.3 92 69.6
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.2e-27 126.3 92 70.7
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.2e-27 126.3 92 71.7
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.2e-27 126.3 93 72.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.2e-27 126.3 93 72.0
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.6e-27 125.9 92 69.6
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.6e-27 125.9 91 70.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.1e-27 125.6 92 68.5
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.8e-27 125.2 92 70.7
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.8e-27 125.2 92 68.5
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.7e-27 124.4 92 68.5
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 4.7e-27 124.4 92 69.6
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.4e-26 122.9 92 69.6
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.8e-26 122.5 92 69.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.3e-26 122.1 97 67.0
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.1e-26 121.7 92 68.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.0e-26 121.3 92 69.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.0e-26 121.3 91 69.2
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 4.0e-26 121.3 91 69.2
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 5.2e-26 120.9 92 68.5
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.5e-25 119.4 92 66.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.5e-25 119.4 89 69.7
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.0e-25 119.0 92 66.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 2.0e-25 119.0 92 67.4
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 2.6e-25 118.6 83 72.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.6e-25 118.6 92 66.3
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-25 117.9 93 66.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.5e-25 117.1 92 66.3
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 7.5e-25 117.1 92 65.2
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.3e-24 116.3 119 56.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.2e-24 115.5 92 63.0
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.2e-24 115.5 92 63.0
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.2e-23 111.7 82 72.0
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 7.1e-23 110.5 77 66.2
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.6e-22 109.4 86 65.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-22 109.4 95 61.1
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.7e-22 108.6 78 65.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.0e-21 106.7 51 92.2
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.7e-21 105.9 92 64.1
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.5e-20 102.1 51 88.2
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.3e-20 101.3 92 62.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.3e-20 101.3 92 62.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.3e-20 101.3 92 62.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.5e-20 100.1 92 55.4
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-19 97.8 92 59.8
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.8e-18 95.9 89 57.3
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 3.1e-18 95.1 77 57.1
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.0e-18 94.7 82 59.8
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 5.2e-18 94.4 77 62.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-15 86.3 51 80.4
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.4e-15 85.5 94 54.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 4.1e-15 84.7 74 60.8
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 9.2e-15 83.6 87 50.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 3.5e-14 81.6 71 62.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 4.6e-14 81.3 88 47.7
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 6.6e-13 77.4 83 55.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.9e-12 75.9 89 44.9
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 9.6e-12 73.6 88 45.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.4e-10 69.7 92 40.2
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 9.9e-09 63.5 52 55.8
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.2e-08 62.4 87 42.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.2e-06 56.6 86 34.9


User provided reference genes

Program Settings