Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 1.4e-232 809.3 410 100.0
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 3.7e-230 801.2 410 98.5
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 5.0e-227 790.8 410 97.1
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 2.0e-207 725.7 406 91.1
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.1e-205 719.9 406 90.4
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 8.6e-203 710.3 415 88.4
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 8.9e-192 673.7 427 82.9
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 1.5e-191 672.9 427 82.9
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 8.9e-184 647.1 417 80.8
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 1.7e-182 642.9 422 79.6
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 1.3e-174 616.7 427 77.8
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 9.0e-168 594.0 445 69.7
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 1.5e-151 540.0 442 66.1
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 4.5e-143 511.9 355 77.2
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 1.1e-133 480.7 441 56.2
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 1.4e-133 480.3 436 57.3
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 2.7e-132 476.1 405 59.0
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 3.9e-131 472.2 404 61.1
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.9e-131 472.2 399 61.2
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 5.1e-131 471.9 434 56.5
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 8.8e-131 471.1 397 61.5
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 1.1e-130 470.7 394 61.2
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 2.6e-130 469.5 400 60.0
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 2.6e-130 469.5 394 61.7
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 3.3e-130 469.2 401 60.8
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 5.7e-130 468.4 394 60.9
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 3.7e-129 465.7 418 58.9
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 8.2e-129 464.5 452 56.0
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 1.1e-128 464.2 404 59.2
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 1.1e-128 464.2 405 59.0
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 2.4e-128 463.0 418 56.7
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 3.1e-128 462.6 432 57.6
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.2e-127 460.7 398 60.8
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.5e-127 460.3 441 56.2
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 7.7e-127 458.0 409 57.5
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.0e-126 457.6 422 57.3
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.9e-126 456.1 422 57.6
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 3.8e-126 455.7 403 60.0
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 3.8e-126 455.7 400 58.5
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 8.5e-126 454.5 398 59.5
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 8.5e-126 454.5 411 57.9
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 1.1e-125 454.1 385 59.7
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 4.2e-125 452.2 398 57.8
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 5.5e-125 451.8 411 55.5
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.6e-124 450.3 420 56.2
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 4.7e-124 448.7 400 56.8
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 1.4e-123 447.2 397 57.4
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 1.8e-123 446.8 402 59.0
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 2.3e-123 446.4 402 57.0
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 3.0e-123 446.0 427 54.6
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 3.0e-123 446.0 423 55.3
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 3.0e-123 446.0 395 60.0
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 3.9e-123 445.7 395 59.2
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.1e-122 444.1 431 55.9
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 1.1e-122 444.1 391 58.8
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 2.6e-122 443.0 406 57.1
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 7.4e-122 441.4 406 56.2
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.3e-121 440.7 431 55.2
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.7e-121 440.3 407 55.8
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 2.2e-121 439.9 386 59.6
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 1.1e-120 437.6 398 57.5
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 1.4e-120 437.2 456 52.4
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 3.1e-120 436.0 433 55.2
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 4.1e-120 435.6 397 57.7
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 4.1e-120 435.6 397 57.7
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 4.1e-120 435.6 390 60.8
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 2.0e-119 433.3 411 54.3
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.3e-118 430.6 418 52.6
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.3e-118 430.6 366 59.6
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 2.2e-118 429.9 421 54.2
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 3.8e-118 429.1 420 54.3
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 8.5e-118 427.9 414 55.3
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 1.5e-117 427.2 385 59.5
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.8e-115 420.2 341 63.3
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 4.0e-115 419.1 409 54.0
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 6.8e-115 418.3 408 54.7
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 6.8e-115 418.3 395 54.9
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.2e-114 417.5 385 56.6
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 7.5e-114 414.8 413 53.0
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 2.0e-111 406.8 372 55.6
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 2.2e-110 403.3 402 53.2
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 3.6e-108 396.0 488 48.2
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.6e-108 396.0 393 54.7
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 2.8e-100 369.8 376 51.6
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.4e-99 367.5 375 52.8
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 1.8e-96 357.1 401 49.6
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.1e-93 347.8 397 48.6
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 4.7e-92 342.4 397 46.6
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 2.9e-89 333.2 335 53.4
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 3.1e-83 313.2 297 57.2
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.2e-81 307.0 328 49.4
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 2.7e-79 300.1 279 56.3
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 1.7e-78 297.4 234 70.5
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 3.0e-78 296.6 312 52.6
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 3.9e-78 296.2 385 43.4
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 8.4e-73 278.5 273 52.7
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 2.1e-68 263.8 262 55.0
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 4.9e-65 252.7 286 51.4
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.6e-60 237.7 348 40.5
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 5.3e-59 232.6 294 44.2
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 7.1e-56 222.2 179 60.3
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 1.2e-55 221.5 379 37.7
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 6.0e-55 219.2 421 34.4
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 3.9e-46 189.9 173 52.6
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 6.9e-43 179.1 205 47.3
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.9e-43 179.1 244 43.0
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 9.3e-40 168.7 261 39.5
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 7.4e-37 159.1 144 55.6
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.6e-36 157.9 145 55.9
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.3e-35 152.9 139 55.4
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 6.9e-35 152.5 134 56.7
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 8.5e-25 119.0 113 54.9
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.0e-21 107.8 100 54.0
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.3e-20 105.1 100 53.0
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 3.8e-17 93.6 97 51.5
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.9e-16 91.3 336 26.2
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.2e-15 88.6 119 40.3
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 1.2e-15 88.6 326 26.1
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 4.7e-15 86.7 339 25.4
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 1.0e-14 85.5 335 24.8
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 3.9e-14 83.6 337 24.0
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.5e-13 81.6 134 35.1
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 1.5e-13 81.6 337 24.0
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.5e-13 81.6 345 24.1
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.3e-13 80.5 340 23.5
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 3.3e-13 80.5 325 24.3
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 3.3e-13 80.5 320 25.0
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 7.4e-13 79.3 373 24.7
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 7.4e-13 79.3 337 23.4
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 9.7e-13 79.0 330 27.9
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.7e-12 78.2 334 23.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.8e-12 76.6 344 22.7
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 6.3e-12 76.3 327 24.2
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 1.8e-11 74.7 332 22.0
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.4e-11 74.3 338 26.0
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 5.3e-11 73.2 340 23.2
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.2e-10 72.0 316 22.8
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.7e-10 69.3 320 23.8
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 3.8e-09 67.0 406 21.4
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 9.4e-08 62.4 334 22.5
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.1e-07 61.2 353 22.1
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.1e-07 61.2 353 22.1
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.7e-07 60.8 321 23.1
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 4.7e-07 60.1 335 22.7


User provided reference genes

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