Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33901 Brassica carinata HOM05D003254 ORTHO05D003713 1.1e-75 286.6 149 100.0
BcaC06g31064 Brassica carinata HOM05D003254 ORTHO05D003713 1.7e-44 183.0 146 74.0
Carub.0005s0456 Capsella rubella HOM05D003254 ORTHO05D003713 1.7e-44 183.0 146 74.0
Thhalv10003891m.g Eutrema salsugineum HOM05D003254 ORTHO05D003713 1.7e-44 183.0 146 74.0
Aa31LG2G5970 Aethionema arabicum HOM05D003254 ORTHO05D003713 2.3e-44 182.6 146 74.0
AL5G15360 Arabidopsis lyrata HOM05D003254 ORTHO05D003713 3.9e-44 181.8 146 73.3
AT3G26570 Arabidopsis thaliana HOM05D003254 ORTHO05D003713 3.9e-44 181.8 146 73.3
A06p41920 Brassica napus HOM05D003254 ORTHO05D003713 5.0e-44 181.4 148 74.3
A09p03090 Brassica napus HOM05D003254 ORTHO05D003713 6.6e-44 181.0 146 73.3
BraA09t35947Z Brassica rapa HOM05D003254 ORTHO05D003713 6.6e-44 181.0 146 73.3
CARHR147580 Cardamine hirsuta HOM05D003254 ORTHO05D003713 6.6e-44 181.0 146 73.3
BcaC06g33902 Brassica carinata HOM05D003254 ORTHO05D003713 1.1e-43 180.3 147 74.8
C07p35550 Brassica napus HOM05D003254 ORTHO05D003713 1.1e-43 180.3 147 74.8
BolC7t44079H Brassica oleracea HOM05D003254 ORTHO05D003713 1.1e-43 180.3 147 74.8
BraA06t27111Z Brassica rapa HOM05D003254 ORTHO05D003713 1.1e-43 180.3 147 74.8
BcaC04g23931 Brassica carinata HOM05D003254 ORTHO05D003713 1.9e-43 179.5 146 72.6
C09p03240 Brassica napus HOM05D003254 ORTHO05D003713 1.9e-43 179.5 146 72.6
BolC9t53249H Brassica oleracea HOM05D003254 ORTHO05D003713 1.9e-43 179.5 146 72.6
Sp2g15680 Schrenkiella parvula HOM05D003254 ORTHO05D003713 7.3e-43 177.6 146 72.6
TWI36G1175 Tripterygium wilfordii HOM05D003254 ORTHO05D003713 7.3e-43 177.6 146 72.6
Aqoxy3G01213 Aquilegia oxysepala HOM05D003254 ORTHO05D003713 3.6e-42 175.3 146 71.9
Cfa009211 Carpinus fangiana HOM05D003254 ORTHO05D003713 4.7e-42 174.9 146 71.9
EL10Ac6g13808 Beta vulgaris HOM05D003254 ORTHO05D003713 6.2e-42 174.5 146 72.6
QL03p058091 Quercus lobata HOM05D003254 ORTHO05D003713 6.2e-42 174.5 146 71.2
Sed0007009 Sechium edule HOM05D003254 ORTHO05D003713 6.2e-42 174.5 146 71.2
TPR.G17752 Trifolium pratense HOM05D003254 ORTHO05D003713 6.2e-42 174.5 146 71.9
Ciclev10031076m.g Citrus clementina HOM05D003254 ORTHO05D003713 8.1e-42 174.1 146 71.9
THA.LOC104825663 Tarenaya hassleriana HOM05D003254 ORTHO05D003713 8.1e-42 174.1 146 70.5
TAR374G0119 Trochodendron aralioides HOM05D003254 ORTHO05D003713 8.1e-42 174.1 146 70.5
Ca_22585_v3 Cicer arietinum L. HOM05D003254 ORTHO05D003713 1.1e-41 173.7 146 71.2
Manes.12G023200 Manihot esculenta HOM05D003254 ORTHO05D003713 1.1e-41 173.7 146 71.2
Os02g0593500 Oryza sativa ssp. japonica HOM05D003254 ORTHO05D003713 1.1e-41 173.7 146 71.2
Zm00001eb245920 Zea mays HOM05D003254 ORTHO05D003713 1.1e-41 173.7 146 71.2
Dinv24783 Davidia involucrata HOM05D003254 ORTHO05D003713 1.4e-41 173.3 146 71.2
Hma1.2p1_0223F.1_g093940 Hydrangea macrophylla HOM05D003254 ORTHO05D003713 1.4e-41 173.3 146 71.2
Hma1.2p1_0223F.1_g093950 Hydrangea macrophylla HOM05D003254 ORTHO05D003713 1.4e-41 173.3 146 71.2
HanXRQChr08g0208181 Helianthus annuus HOM05D003254 ORTHO05D003713 1.8e-41 172.9 146 70.5
Duzib248G0244 Durio zibethinus HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 71.2
Eucgr.H02499 Eucalyptus grandis HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 71.9
Lsat_1_v5_gn_8_152120 Lactuca sativa HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 70.5
Nn4g22620 Nelumbo nucifera HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 71.2
PGR102G1504 Punica granatum HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 71.9
TWI18G1442 Tripterygium wilfordii HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 70.5
GSVIVG01005753001 Vitis vinifera HOM05D003254 ORTHO05D003713 2.3e-41 172.6 146 70.5
Nitab4.5_0000370g0100 Nicotiana tabacum HOM05D003254 ORTHO05D003713 3.1e-41 172.2 146 71.2
Phvul.003G064900 Phaseolus vulgaris HOM05D003254 ORTHO05D003713 3.1e-41 172.2 146 71.2
PGR119G0064 Punica granatum HOM05D003254 ORTHO05D003713 3.1e-41 172.2 146 70.5
Rhsim12G0110200 Rhododendron simsii HOM05D003254 ORTHO05D003713 3.1e-41 172.2 146 70.5
Glyma.18G144100 Glycine max HOM05D003254 ORTHO05D003713 4.0e-41 171.8 146 71.2
Lj6A812T47 Lonicera japonica HOM05D003254 ORTHO05D003713 4.0e-41 171.8 146 71.2
Actinidia15096 Actinidia chinensis HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 70.5
arahy.Tifrunner.gnm1.ann1.9P3HYP Arachis hypogaea HOM05D003254 ORTHO05D003713 5.2e-41 171.4 147 70.1
arahy.Tifrunner.gnm1.ann1.E5Z9NB Arachis hypogaea HOM05D003254 ORTHO05D003713 5.2e-41 171.4 147 70.1
Cpa.g.sc33.20 Carica papaya HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 69.9
CiPaw.05G182400 Carya illinoinensis HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 71.2
MELO3C011950.2 Cucumis melo HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 71.2
ECA233G5985 Erigeron canadensis HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 69.9
Lalb_Chr05g0216571 Lupinus albus HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 71.2
Thecc.02G259900 Theobroma cacao HOM05D003254 ORTHO05D003713 5.2e-41 171.4 146 70.5
ClCG05G025750 Citrullus lanatus HOM05D003254 ORTHO05D003713 6.8e-41 171.0 146 71.2
COL.COLO4_24275 Corchorus olitorius HOM05D003254 ORTHO05D003713 8.9e-41 170.6 146 69.9
CsaV3_5G031110 Cucumis sativus L. HOM05D003254 ORTHO05D003713 8.9e-41 170.6 146 71.2
HPP92_004619 Vanilla planifolia HOM05D003254 ORTHO05D003713 8.9e-41 170.6 146 69.2
VMungo0251G2727 Vigna mungo HOM05D003254 ORTHO05D003713 8.9e-41 170.6 146 70.5
Eucgr.B03285 Eucalyptus grandis HOM05D003254 ORTHO05D003713 1.2e-40 170.2 146 69.9
Prupe.1G244400 Prunus persica HOM05D003254 ORTHO05D003713 1.2e-40 170.2 146 69.9
Sabra10G0022500 Salix brachista HOM05D003254 ORTHO05D003713 1.2e-40 170.2 146 69.9
vmacro16195 Vaccinium macrocarpon HOM05D003254 ORTHO05D003713 1.2e-40 170.2 146 70.5
ATR0824G202 Amborella trichopoda HOM05D003254 ORTHO05D003713 1.5e-40 169.9 146 70.5
Duzib251G0314 Durio zibethinus HOM05D003254 ORTHO05D003713 1.5e-40 169.9 146 70.5
Peaxi162Scf00076g00027 Petunia axillaris HOM05D003254 ORTHO05D003713 1.5e-40 169.9 146 69.9
CANSAT01G2197 Cannabis sativa HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 68.5
CDE04G2624 Ceratophyllum demersum HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
FvH4_4g25560 Fragaria vesca HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
FAN07G0157 Fragaria x ananassa HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
FAN12G0137 Fragaria x ananassa HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
FAN17G2214 Fragaria x ananassa HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
FAN22G1441 Fragaria x ananassa HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
Glyma.08G282100 Glycine max HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.2
PSO017G3346 Papaver somniferum HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
Potri.010G046300 Populus trichocarpa HOM05D003254 ORTHO05D003713 2.0e-40 169.5 146 69.9
AUR62005463 Chenopodium quinoa HOM05D003254 ORTHO05D003713 2.6e-40 169.1 146 70.5
Lj2g0004909 Lotus japonicus HOM05D003254 ORTHO05D003713 2.6e-40 169.1 146 68.5
Ah.03g133020 Amaranthus hybridus HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
CDE07G1933 Ceratophyllum demersum HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
Gohir.A03G135300 Gossypium hirsutum HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
Gohir.D02G158800 Gossypium hirsutum HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
Gorai.005G178500 Gossypium raimondii HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
MBI10_g03714_MAGBIO Magnolia biondii HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
MD16G1102200 Malus domestica HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.2
PSO478G2352 Papaver somniferum HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
RcHm_v2.0_Chr4g0432971 Rosa chinensis HOM05D003254 ORTHO05D003713 3.4e-40 168.7 146 69.9
Psat4g115400 Pisum sativum HOM05D003254 ORTHO05D003713 4.4e-40 168.3 146 69.9
Sabra08G0141400 Salix brachista HOM05D003254 ORTHO05D003713 4.4e-40 168.3 146 69.2
MSTRG.566 Avicennia marina HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.9
AUR62024277 Chenopodium quinoa HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.9
MD13G1101400 Malus domestica HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.2
Nitab4.5_0000007g0040 Nicotiana tabacum HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.9
Oeu056711.1 Olea europaea HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.9
Potri.008G186601 Populus trichocarpa HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.2
Sc04g0009480 Simmondsia chinensis HOM05D003254 ORTHO05D003713 5.8e-40 167.9 146 69.9
Medtr8g069390 Medicago truncatula HOM05D003254 ORTHO05D003713 7.5e-40 167.5 146 68.5
CSS0025345 Camellia sinensis var. sinensis HOM05D003254 ORTHO05D003713 9.9e-40 167.2 146 68.5
Cc11_g15740 Coffea canephora HOM05D003254 ORTHO05D003713 9.9e-40 167.2 146 69.2
DCAR_026513 Daucus carota HOM05D003254 ORTHO05D003713 9.9e-40 167.2 146 67.8
Nitab4.5_0003609g0020 Nicotiana tabacum HOM05D003254 ORTHO05D003713 9.9e-40 167.2 146 69.9
MSTRG.7932 Avicennia marina HOM05D003254 ORTHO05D003713 1.3e-39 166.8 146 69.2
Peaxi162Scf00128g00139 Petunia axillaris HOM05D003254 ORTHO05D003713 1.3e-39 166.8 146 69.2
Oeu038630.2 Olea europaea HOM05D003254 ORTHO05D003713 1.7e-39 166.4 146 68.5
Lj4g0008501 Lotus japonicus HOM05D003254 ORTHO05D003713 2.2e-39 166.0 146 68.5
SGA_v2.0_scaffold476G52135 Striga asiatica HOM05D003254 ORTHO05D003713 2.9e-39 165.6 144 70.1
Migut.K00598 Erythranthe guttata HOM05D003254 ORTHO05D003713 4.9e-39 164.9 146 69.2
SalBow2G2862 Salvia bowleyana HOM05D003254 ORTHO05D003713 4.9e-39 164.9 146 69.2
PSO478G3818 Papaver somniferum HOM05D003254 ORTHO05D003713 6.4e-39 164.5 146 67.8
Lalb_Chr16g0381911 Lupinus albus HOM05D003254 ORTHO05D003713 1.1e-38 163.7 146 67.1
CAN.G832.1 Capsicum annuum HOM05D003254 ORTHO05D003713 1.4e-38 163.3 146 67.1
PSO017G4818 Papaver somniferum HOM05D003254 ORTHO05D003713 4.1e-38 161.8 146 66.4
Sopen05g008390 Solanum pennellii HOM05D003254 ORTHO05D003713 5.4e-38 161.4 146 67.1
TAR622G0245 Trochodendron aralioides HOM05D003254 ORTHO05D003713 7.1e-38 161.0 138 71.0
unitig_747.g21153 Utricularia gibba HOM05D003254 ORTHO05D003713 7.1e-38 161.0 146 67.8
PGSC0003DMG400018604 Solanum tuberosum HOM05D003254 ORTHO05D003713 1.2e-37 160.2 146 66.4
Pp3c9_7350 Physcomitrium patens HOM05D003254 ORTHO05D003713 6.0e-37 157.9 146 62.3
Nitab4.5_0010104g0010 Nicotiana tabacum HOM05D003254 ORTHO05D003713 5.1e-36 154.8 147 68.0
SEGI_27895 Sequoiadendron giganteum HOM05D003254 ORTHO05D003713 1.9e-35 152.9 146 62.3
Mapoly0138s0013 Marchantia polymorpha HOM05D003254 ORTHO05D003713 2.5e-35 152.5 146 61.0
AagrBONN_evm.TU.Sc2ySwM_368.1920 Anthoceros agrestis HOM05D003254 ORTHO05D003713 1.6e-34 149.8 146 61.0
SMO118G0341 Selaginella moellendorffii HOM05D003254 ORTHO05D003713 3.6e-34 148.7 146 61.6
CBR_g9141 Chara braunii HOM05D003254 ORTHO05D003713 2.4e-33 146.0 147 56.5
SEGI_17608 Sequoiadendron giganteum HOM05D003254 ORTHO05D003713 9.9e-32 140.6 146 57.5
Solyc05g013510.4 Solanum lycopersicum HOM05D003254 ORTHO05D003713 4.0e-25 118.6 119 64.7
Dinv09261 Davidia involucrata HOM05D003254 ORTHO05D003713 2.9e-23 112.5 115 64.3
Dinv09282 Davidia involucrata HOM05D003254 ORTHO05D003713 2.9e-23 112.5 115 64.3
Atru.chr11.2097 Acer truncatum HOM05D003254 ORTHO05D003713 7.1e-22 107.8 63 88.9
DCAR_024429 Daucus carota HOM05D003254 ORTHO05D003713 1.4e-14 83.6 56 83.9
HPP92_004613 Vanilla planifolia HOM05D003254 ORTHO05D003713 6.0e-13 78.2 56 75.0
TAR629G1948 Trochodendron aralioides HOM05D003254 ORTHO05D003713 1.0e-12 77.4 56 76.8
SMO367G0749 Selaginella moellendorffii HOM05D003254 ORTHO05D011403 2.3e-12 76.3 143 35.7
CBR_g17746 Chara braunii HOM05D003254 ORTHO05D003713 5.6e-11 71.6 151 36.4
CBR_g17753 Chara braunii HOM05D003254 ORTHO05D003713 5.6e-11 71.6 151 36.4
CBR_g17754 Chara braunii HOM05D003254 ORTHO05D003713 1.6e-10 70.1 151 35.8
CBR_g49563 Chara braunii HOM05D003254 ORTHO05D003713 1.6e-10 70.1 152 34.2
CBR_g40045 Chara braunii HOM05D003254 ORTHO05D003713 2.8e-10 69.3 152 32.2
Cre12.g491600 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 8.1e-10 67.8 143 36.4
Cre16.g676757 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 3.1e-09 65.9 145 35.2
Pp3c15_12150 Physcomitrium patens HOM05D003254 ORTHO05D003713 4.0e-09 65.5 56 60.7
CBR_g48731 Chara braunii HOM05D003254 ORTHO05D003713 6.9e-09 64.7 144 35.4
CBR_g40051 Chara braunii HOM05D003254 ORTHO05D003713 3.4e-08 62.4 157 32.5
Cre02.g144650 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 3.4e-08 62.4 154 33.1
Cre02.g144600 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 5.8e-08 61.6 154 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1874 Anthoceros agrestis HOM05D009361 ORTHO05D011403 9.9e-08 60.8 139 33.1
Cfa021465 Carpinus fangiana HOM05D003254 ORTHO05D003713 9.9e-08 60.8 148 33.8
CBR_g48724 Chara braunii HOM05D003254 ORTHO05D003713 1.3e-07 60.5 146 34.2
Cre02.g144750 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 1.3e-07 60.5 156 33.3
Mapoly0006s0164 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.7e-07 60.1 148 35.1
Mapoly0054s0124 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.7e-07 60.1 143 32.2
Mapoly0126s0002 Marchantia polymorpha HOM05D003254 ORTHO05D003713 2.9e-07 59.3 143 32.9
Cre02.g144700 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 3.8e-07 58.9 156 32.1
Mapoly0054s0123 Marchantia polymorpha HOM05D003254 ORTHO05D003713 4.9e-07 58.5 143 31.5
Cre12.g493404 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 6.4e-07 58.2 123 37.4
Mapoly0008s0184 Marchantia polymorpha HOM05D003254 ORTHO05D003713 8.4e-07 57.8 142 31.0
Mapoly0054s0128 Marchantia polymorpha HOM05D003254 ORTHO05D003713 8.4e-07 57.8 145 31.0
Mapoly0070s0073 Marchantia polymorpha HOM05D003254 ORTHO05D003713 8.4e-07 57.8 148 33.8
Mapoly0126s0001 Marchantia polymorpha HOM05D003254 ORTHO05D003713 8.4e-07 57.8 143 32.2
Mapoly0054s0126 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.1e-06 57.4 143 30.8
Mapoly0054s0127 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.1e-06 57.4 143 30.8
Mapoly0126s0004 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.1e-06 57.4 143 30.8
Mapoly0126s0023 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.1e-06 57.4 143 31.5
Cre16.g655200 Chlamydomonas reinhardtii HOM05D003254 ORTHO05D003713 1.4e-06 57.0 150 31.3
Mapoly0054s0125 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.4e-06 57.0 143 31.5
Mapoly0098s0054 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.4e-06 57.0 148 33.1
Mapoly0098s0056 Marchantia polymorpha HOM05D003254 ORTHO05D003713 1.4e-06 57.0 148 33.1
ATR0730G048 Amborella trichopoda HOM05D003254 ORTHO05D003713 1.9e-06 56.6 32 93.8
Pp3c16_25600 Physcomitrium patens HOM05D003254 ORTHO05D003713 3.2e-06 55.8 151 29.8
Mapoly0126s0024 Marchantia polymorpha HOM05D003254 ORTHO05D003713 4.2e-06 55.5 143 30.1
MCO04G206 Micromonas commoda HOM05D003254 ORTHO05D003713 4.2e-06 55.5 148 33.8


User provided reference genes

Program Settings