Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 9.3e-53 209.9 104 100.0
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 3.0e-11 72.0 44 77.3
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 3.9e-11 71.6 35 94.3
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 3.9e-11 71.6 35 94.3
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 5.1e-11 71.2 35 91.4
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 5.1e-11 71.2 35 91.4
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 2.0e-10 69.3 35 88.6
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 2.5e-10 68.9 37 83.8
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 3.3e-10 68.6 42 76.2
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 4.3e-10 68.2 35 88.6
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 4.3e-10 68.2 35 88.6
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 4.3e-10 68.2 35 88.6
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 5.7e-10 67.8 35 88.6
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 9.7e-10 67.0 37 81.1
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 9.7e-10 67.0 36 83.3
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 9.7e-10 67.0 44 72.7
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.7e-09 66.2 35 85.7
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.7e-09 66.2 35 85.7
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 2.8e-09 65.5 35 85.7
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 2.8e-09 65.5 35 85.7
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 2.8e-09 65.5 35 85.7
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 6.3e-09 64.3 35 80.0
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.2e-07 60.1 35 74.3
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 1.2e-07 60.1 42 59.5
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 1.5e-07 59.7 36 69.4
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.5e-07 59.7 36 69.4
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 1.5e-07 59.7 35 74.3
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 1.5e-07 59.7 44 59.1
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 1.5e-07 59.7 36 69.4
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 2.0e-07 59.3 35 71.4
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 2.0e-07 59.3 40 65.0
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 2.0e-07 59.3 40 65.0
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 2.6e-07 58.9 86 39.5
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 2.6e-07 58.9 35 71.4
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 2.6e-07 58.9 36 69.4
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 2.6e-07 58.9 35 71.4
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 2.6e-07 58.9 35 74.3
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 2.6e-07 58.9 42 61.9
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 2.6e-07 58.9 33 75.8
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 3.4e-07 58.5 42 61.9
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 3.4e-07 58.5 44 59.1
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 3.4e-07 58.5 43 58.1
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 3.4e-07 58.5 84 40.5
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 4.5e-07 58.2 45 57.8
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 4.5e-07 58.2 45 57.8
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 4.5e-07 58.2 45 57.8
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 4.5e-07 58.2 42 61.9
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 4.5e-07 58.2 86 39.5
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 5.9e-07 57.8 35 71.4
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 5.9e-07 57.8 35 71.4
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 5.9e-07 57.8 35 68.6
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 5.9e-07 57.8 51 56.9
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 5.9e-07 57.8 42 59.5
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 5.9e-07 57.8 43 58.1
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 5.9e-07 57.8 35 65.7
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 7.7e-07 57.4 33 72.7
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 7.7e-07 57.4 44 59.1
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 7.7e-07 57.4 42 59.5
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 7.7e-07 57.4 40 57.5
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 1.0e-06 57.0 40 60.0
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.0e-06 57.0 42 59.5
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.0e-06 57.0 33 72.7
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.3e-06 56.6 42 59.5
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 1.3e-06 56.6 42 59.5
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 1.3e-06 56.6 35 71.4
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 1.3e-06 56.6 43 55.8
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.3e-06 56.6 35 65.7
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 1.3e-06 56.6 35 62.9
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 1.3e-06 56.6 42 61.9
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 1.3e-06 56.6 42 57.1
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 1.7e-06 56.2 43 55.8
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 1.7e-06 56.2 35 68.6
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 1.7e-06 56.2 35 68.6
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 1.7e-06 56.2 43 55.8
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 1.7e-06 56.2 35 71.4
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 2.2e-06 55.8 42 54.8
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 2.2e-06 55.8 42 59.5
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 2.2e-06 55.8 32 71.9
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 2.2e-06 55.8 42 57.1
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 2.9e-06 55.5 44 54.5
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.9e-06 55.5 42 57.1
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 2.9e-06 55.5 42 54.8
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.8e-06 55.1 51 52.9
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 3.8e-06 55.1 44 54.5
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 3.8e-06 55.1 42 54.8
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.8e-06 55.1 44 54.5
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 3.8e-06 55.1 42 59.5
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 5.0e-06 54.7 43 55.8
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 5.0e-06 54.7 42 57.1
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 5.0e-06 54.7 35 65.7
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.0e-06 54.7 35 65.7
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 5.0e-06 54.7 35 65.7
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 5.0e-06 54.7 42 54.8
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 5.0e-06 54.7 44 54.5
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 6.5e-06 54.3 42 54.8
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 6.5e-06 54.3 42 54.8
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 6.5e-06 54.3 36 66.7
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 6.5e-06 54.3 33 66.7
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 8.5e-06 53.9 35 62.9
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 8.5e-06 53.9 36 63.9
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 8.5e-06 53.9 44 56.8
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 8.5e-06 53.9 42 54.8
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 8.5e-06 53.9 44 52.3
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 8.5e-06 53.9 35 62.9
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 8.5e-06 53.9 35 65.7
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 8.5e-06 53.9 42 54.8


User provided reference genes

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