Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33866 Brassica carinata HOM05D010449 ORTHO05D012420 8.9e-162 573.5 289 100.0
BolC7t44127H Brassica oleracea HOM05D010449 ORTHO05D012420 1.7e-157 559.3 282 99.3
C07p36120 Brassica napus HOM05D010449 ORTHO05D012420 1.4e-154 549.7 282 97.9
BraA06t27079Z Brassica rapa HOM05D010449 ORTHO05D012420 5.4e-135 484.6 288 87.8
A06p41540 Brassica napus HOM05D010449 ORTHO05D012420 3.2e-127 458.8 288 85.4
BcaC06g33867 Brassica carinata HOM05D010449 ORTHO05D012420 6.2e-107 391.3 290 74.1
Thhalv10004671m.g Eutrema salsugineum HOM05D010449 ORTHO05D012420 3.8e-104 382.1 304 69.4
Sp2g16150 Schrenkiella parvula HOM05D010449 ORTHO05D012420 2.1e-102 376.3 304 70.1
BcaC06g31026 Brassica carinata HOM05D010449 ORTHO05D012420 2.1e-99 366.3 290 71.0
BcaB07g30195 Brassica carinata HOM05D010449 ORTHO05D012420 5.1e-93 345.1 294 64.6
BcaB07g30196 Brassica carinata HOM05D010449 ORTHO05D012420 7.2e-87 324.7 311 58.8
BcaC03g17417 Brassica carinata HOM05D010449 ORTHO05D012420 7.9e-86 321.2 300 62.7
AL5G16060 Arabidopsis lyrata HOM05D010449 ORTHO05D012420 1.1e-82 310.8 306 62.4
C02p53670 Brassica napus HOM05D010449 ORTHO05D012420 2.4e-82 309.7 293 61.4
A02p34990 Brassica napus HOM05D010449 ORTHO05D012420 4.5e-81 305.4 293 60.4
BraA02t08508Z Brassica rapa HOM05D010449 ORTHO05D012420 5.9e-81 305.1 293 60.4
Carub.0005s0522 Capsella rubella HOM05D010449 ORTHO05D012420 5.0e-80 302.0 304 60.2
BolC2t11435H Brassica oleracea HOM05D010449 ORTHO05D012420 3.2e-79 299.3 294 60.2
CARHR148230 Cardamine hirsuta HOM05D010449 ORTHO05D012420 1.3e-72 277.3 294 60.2
AT3G27025 Arabidopsis thaliana HOM05D010449 ORTHO05D012420 1.1e-55 221.1 224 58.5
THA.LOC104825628 Tarenaya hassleriana HOM05D002793 ORTHO05D012420 1.4e-18 97.8 364 30.8
Haze_14896 Corylus avellana HOM05D002793 ORTHO05D002965 3.3e-15 86.7 390 29.2
Duzib147G0228 Durio zibethinus HOM05D002793 ORTHO05D002965 5.6e-15 85.9 395 28.6
Aa31LG2G5560 Aethionema arabicum HOM05D010449 ORTHO05D012420 4.7e-14 82.8 118 45.8
PGR142G0558 Punica granatum HOM05D002793 ORTHO05D002965 6.8e-13 79.0 359 26.7
Sed0001489 Sechium edule HOM05D002793 ORTHO05D002965 9.9e-12 75.1 366 29.2
Ciclev10018081m.g Citrus clementina HOM05D002793 ORTHO05D002965 4.9e-11 72.8 301 29.2
Lalb_Chr00c01g0403751 Lupinus albus HOM05D002793 ORTHO05D002965 4.9e-11 72.8 367 26.4
Potri.001G327500 Populus trichocarpa HOM05D002793 ORTHO05D002965 6.4e-11 72.4 385 24.9
Glyma.19G094600 Glycine max HOM05D002793 ORTHO05D002965 1.4e-10 71.2 384 25.0
Glyma.16G054300 Glycine max HOM05D002793 ORTHO05D002965 1.9e-10 70.9 385 26.5
Medtr7g028590 Medicago truncatula HOM05D002793 ORTHO05D002965 2.1e-09 67.4 348 28.4
Nn3g16401 Nelumbo nucifera HOM05D002793 ORTHO05D002965 2.1e-09 67.4 395 27.3
Oeu035240.1 Olea europaea HOM05D002793 ORTHO05D002965 2.1e-09 67.4 355 29.0
GSVIVG01033059001 Vitis vinifera HOM05D002793 ORTHO05D002965 6.0e-09 65.9 363 28.7
Cpa.g.sc286.6 Carica papaya HOM05D002793 ORTHO05D002965 1.7e-08 64.3 377 23.9
Nitab4.5_0000542g0010 Nicotiana tabacum HOM05D002793 ORTHO05D002965 1.7e-08 64.3 342 27.5
Sed0007037 Sechium edule HOM05D002793 ORTHO05D002965 1.7e-08 64.3 374 27.3
MELO3C014898.2 Cucumis melo HOM05D002793 ORTHO05D002965 2.3e-08 63.9 376 27.9
Lj1g0014710 Lotus japonicus HOM05D002793 ORTHO05D002965 5.1e-08 62.8 285 29.1
Lalb_Chr22g0360281 Lupinus albus HOM05D002793 ORTHO05D002965 1.9e-07 60.8 352 29.0
Aqoxy5G03293 Aquilegia oxysepala HOM05D002793 ORTHO05D002965 2.5e-07 60.5 367 25.9
Psat3g162720 Pisum sativum HOM05D002793 ORTHO05D002965 2.5e-07 60.5 355 27.6
HanXRQChr08g0209951 Helianthus annuus HOM05D002793 ORTHO05D002965 3.3e-07 60.1 330 27.0
Dinv33324 Davidia involucrata HOM05D002793 ORTHO05D002965 5.6e-07 59.3 297 28.3
Gohir.D02G146600 Gossypium hirsutum HOM05D002793 ORTHO05D002965 5.6e-07 59.3 400 25.2
Phvul.001G088600 Phaseolus vulgaris HOM05D002793 ORTHO05D002965 5.6e-07 59.3 385 25.2
MD17G1002300 Malus domestica HOM05D002793 ORTHO05D002965 7.3e-07 58.9 387 25.1
PGSC0003DMG401019811 Solanum tuberosum HOM05D002793 ORTHO05D002965 7.3e-07 58.9 384 25.3
Gorai.005G164100 Gossypium raimondii HOM05D002793 ORTHO05D002965 9.6e-07 58.5 400 25.2
Solyc05g015880.3 Solanum lycopersicum HOM05D002793 ORTHO05D002965 9.6e-07 58.5 388 25.5
Thecc.02G201800 Theobroma cacao HOM05D002793 ORTHO05D002965 1.3e-06 58.2 385 24.4
CANSAT64G0260 Cannabis sativa HOM05D002793 ORTHO05D002965 2.1e-06 57.4 407 25.8
Gorai.009G332000 Gossypium raimondii HOM05D002793 ORTHO05D002965 2.1e-06 57.4 404 26.0
Duzib268G1080 Durio zibethinus HOM05D002793 ORTHO05D002965 2.8e-06 57.0 388 26.0
Gorai.012G084800 Gossypium raimondii HOM05D002793 ORTHO05D002965 2.8e-06 57.0 370 24.9
Gohir.A05G336800 Gossypium hirsutum HOM05D002793 ORTHO05D002965 6.2e-06 55.8 369 24.9
Gohir.D04G075300 Gossypium hirsutum HOM05D002793 ORTHO05D002965 6.2e-06 55.8 379 25.3


User provided reference genes

Program Settings