Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 0.0e+00 1145.6 554 100.0
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 4.6e-284 980.7 511 94.7
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.8e-283 978.8 515 93.2
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.8e-281 971.5 511 93.9
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.4e-272 942.6 505 91.9
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 1.5e-271 939.1 511 90.8
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 2.5e-269 931.8 509 90.0
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 9.3e-269 929.9 508 89.6
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 2.7e-268 928.3 535 85.8
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 3.5e-268 927.9 508 89.8
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 9.0e-264 913.3 508 88.4
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 2.6e-250 868.6 497 85.1
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 5.4e-224 781.2 505 76.4
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 1.4e-200 703.4 502 67.5
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 5.1e-198 694.9 489 70.6
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.2e-196 690.3 502 66.9
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 1.2e-196 690.3 504 66.7
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.1e-196 689.5 501 66.9
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.7e-196 688.3 505 67.3
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 6.2e-196 688.0 493 68.0
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.1e-195 687.2 502 66.7
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 2.3e-195 686.0 503 66.6
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 5.2e-195 684.9 468 69.4
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 6.8e-195 684.5 496 67.3
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 5.8e-194 681.4 499 67.9
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.5e-194 681.0 501 66.9
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.7e-193 679.9 506 67.2
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 4.1e-192 675.2 506 66.0
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 9.2e-192 674.1 497 66.2
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 1.2e-191 673.7 506 66.0
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 6.0e-191 671.4 500 65.6
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.3e-190 670.2 498 65.1
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 3.0e-190 669.1 459 69.7
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 3.9e-190 668.7 459 69.5
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.1e-189 667.2 499 64.9
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.1e-189 667.2 508 64.6
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.9e-189 666.4 469 67.0
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 4.3e-189 665.2 502 65.9
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 2.8e-188 662.5 497 64.6
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.4e-187 660.2 459 68.0
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 2.4e-187 659.4 513 63.4
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 2.4e-187 659.4 508 64.2
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 5.2e-187 658.3 489 65.6
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 6.8e-187 657.9 459 67.8
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.2e-186 657.1 470 66.6
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 7.6e-186 654.4 492 65.0
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.7e-185 653.3 504 63.5
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.7e-185 653.3 481 66.5
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 2.2e-185 652.9 489 65.4
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 6.4e-185 651.4 482 66.0
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 8.4e-185 651.0 489 65.2
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 2.1e-183 646.4 463 67.4
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.1e-183 646.4 439 68.6
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 1.3e-182 643.7 505 63.8
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.7e-182 643.3 469 65.5
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 5.1e-182 641.7 485 63.1
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 8.7e-182 641.0 457 66.7
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 2.5e-181 639.4 477 65.0
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.3e-181 639.0 491 64.2
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 4.3e-181 638.6 460 65.2
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 4.7e-180 635.2 463 65.7
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.8e-179 633.3 454 66.1
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.8e-179 633.3 463 65.4
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.4e-179 632.9 516 62.0
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 3.1e-179 632.5 486 64.2
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.2e-177 626.3 517 60.3
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 6.4e-177 624.8 462 65.6
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.9e-176 623.2 496 61.9
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 2.4e-176 622.9 481 63.2
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 7.8e-175 617.8 503 59.4
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 2.3e-174 616.3 463 64.1
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.5e-173 613.6 476 62.6
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 3.6e-172 609.0 485 61.0
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 4.8e-172 608.6 462 64.1
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 4.9e-169 598.6 482 60.6
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 9.3e-168 594.3 496 59.1
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 2.3e-166 589.7 432 65.5
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 7.4e-165 584.7 506 58.9
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.8e-163 580.1 486 58.0
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.0e-163 578.9 458 60.7
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.5e-162 577.0 450 63.8
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.7e-161 573.5 413 67.3
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 3.3e-157 559.3 450 60.4
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 5.6e-157 558.5 470 57.0
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.1e-152 544.3 514 55.4
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 5.5e-152 542.0 418 62.0
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.2e-146 524.2 487 55.9
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 8.8e-142 508.1 288 89.2
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 6.5e-137 491.9 491 53.8
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.0e-134 484.6 476 51.1
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 3.8e-129 466.1 472 48.1
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.7e-127 459.1 366 63.4
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 5.3e-123 445.7 337 65.3
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 8.5e-121 438.3 444 47.3
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 9.4e-120 434.9 314 66.6
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 8.0e-119 431.8 320 68.1
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.7e-116 422.9 339 62.8
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.0e-110 403.3 388 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.6e-103 379.8 385 47.3
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 2.0e-101 374.0 309 58.3
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.8e-95 353.6 277 64.3
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.1e-91 341.7 359 45.4
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 1.2e-87 328.2 245 62.9
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 3.1e-86 323.6 296 58.4
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 5.2e-86 322.8 267 60.7
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.1e-81 306.2 389 44.2
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 2.1e-71 274.2 212 62.3
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 9.9e-69 265.4 518 35.5
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 7.3e-56 222.6 527 30.6
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 4.9e-52 209.9 127 70.9
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 7.1e-43 179.5 90 95.6
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 5.7e-40 169.9 126 60.3
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 2.0e-29 134.8 454 27.8
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 8.5e-28 129.4 87 69.0
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 5.0e-20 103.6 73 64.4
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.5e-16 92.0 78 61.5
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 5.7e-16 90.1 359 24.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.7e-16 90.1 65 60.0
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.8e-15 87.8 384 22.1
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 3.7e-15 87.4 175 29.7
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 2.4e-14 84.7 73 57.5
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 8.5e-12 76.3 93 43.0
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 9.4e-11 72.8 38 76.3
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.3e-09 68.2 77 46.8
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 1.8e-06 58.5 67 52.2


User provided reference genes

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