Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 4.2e-93 344.7 181 100.0
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 1.3e-91 339.7 181 98.9
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.2e-87 326.6 181 95.6
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.2e-79 300.1 180 90.6
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.2e-79 300.1 180 90.6
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 5.9e-71 271.2 183 83.1
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 1.1e-61 240.4 181 74.0
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 3.6e-52 208.8 190 61.1
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 6.1e-52 208.0 191 60.7
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.4e-51 206.8 179 65.4
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 4.0e-51 205.3 179 64.8
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 1.2e-50 203.8 179 67.0
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 1.2e-50 203.8 187 62.0
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 2.2e-49 199.5 184 65.2
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 1.6e-47 193.4 196 57.7
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 3.3e-45 185.7 178 61.2
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 3.3e-45 185.7 178 61.2
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 2.8e-44 182.6 177 55.4
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 8.0e-44 181.0 179 60.3
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.0e-43 180.6 176 58.5
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.5e-37 160.2 179 52.0
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 1.1e-32 144.1 181 46.4
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 7.8e-31 137.9 177 45.8
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 6.6e-30 134.8 183 42.1
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 8.6e-30 134.4 179 41.9
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 3.3e-29 132.5 176 44.9
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 5.6e-29 131.7 182 43.4
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 5.6e-29 131.7 134 57.5
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 7.3e-29 131.3 180 43.9
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 6.2e-28 128.3 179 45.3
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 2.3e-27 126.3 178 43.3
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 4.0e-27 125.6 178 42.7
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 4.0e-27 125.6 179 45.8
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 4.0e-27 125.6 179 44.7
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.0e-27 125.6 178 41.6
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 5.2e-27 125.2 178 46.1
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 6.8e-27 124.8 183 44.8
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 6.8e-27 124.8 175 45.7
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 8.9e-27 124.4 181 45.9
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 8.9e-27 124.4 179 41.9
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 2.9e-25 119.4 179 43.6
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.9e-24 116.7 178 39.9
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.9e-24 116.7 182 40.1
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 5.4e-24 115.2 177 41.8
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 2.1e-23 113.2 175 40.6
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 2.1e-23 113.2 181 37.6
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 2.7e-23 112.8 182 40.1
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 2.7e-23 112.8 187 36.9
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 2.7e-23 112.8 187 38.5
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.5e-23 112.5 180 41.1
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 3.5e-23 112.5 179 39.7
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 4.6e-23 112.1 182 36.8
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 7.8e-23 111.3 179 41.9
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.3e-22 110.5 183 41.5
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 2.3e-22 109.8 176 40.3
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 3.9e-22 109.0 178 38.8
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 5.1e-22 108.6 181 39.2
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 8.6e-22 107.8 178 41.0
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 1.1e-21 107.5 176 37.5
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 1.5e-21 107.1 179 38.5
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 1.9e-21 106.7 183 38.8
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 2.5e-21 106.3 181 39.2
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.3e-21 105.9 181 40.9
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 3.3e-21 105.9 179 36.3
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.3e-21 105.5 180 40.6
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 4.3e-21 105.5 179 36.9
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 4.3e-21 105.5 176 36.9
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 5.6e-21 105.1 182 37.4
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 5.6e-21 105.1 181 36.5
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 9.5e-21 104.4 178 39.9
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.2e-20 104.0 178 39.3
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 1.2e-20 104.0 184 35.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 1.6e-20 103.6 184 38.6
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 1.6e-20 103.6 175 38.9
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.6e-20 103.6 182 37.9
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 2.1e-20 103.2 180 38.9
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 2.1e-20 103.2 174 40.8
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 6.2e-20 101.7 181 39.2
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.1e-19 99.4 181 38.7
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.0e-19 99.0 181 38.7
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 4.0e-19 99.0 180 36.1
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 5.2e-19 98.6 180 36.1
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 1.5e-18 97.1 179 36.9
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 1.5e-18 97.1 180 34.4
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 2.0e-18 96.7 179 36.9
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 1.3e-17 94.0 139 43.2
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 1.7e-17 93.6 179 38.0
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 2.2e-17 93.2 166 36.1
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 2.2e-17 93.2 178 38.2
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.9e-17 92.8 210 33.3
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.7e-17 92.4 174 34.5
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 1.4e-16 90.5 184 33.2
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 1.9e-16 90.1 173 38.2
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 3.2e-16 89.4 183 33.9
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 1.2e-15 87.4 179 36.3
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 1.6e-15 87.0 187 34.8
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 2.7e-15 86.3 174 33.3
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 2.7e-15 86.3 172 35.5
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 6.0e-15 85.1 180 33.9
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.3e-14 84.0 177 32.8
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 1.7e-14 83.6 176 35.2
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 3.9e-14 82.4 203 34.5
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 5.1e-14 82.0 183 33.3
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 1.1e-13 80.9 175 32.6
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 5.6e-13 78.6 182 34.1
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 5.6e-13 78.6 180 32.2
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 1.2e-12 77.4 179 31.3
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 2.1e-12 76.6 177 31.6
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 6.2e-12 75.1 174 32.8
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 8.1e-12 74.7 185 30.3
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 1.1e-11 74.3 176 29.5
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 1.1e-11 74.3 179 31.8
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 5.2e-11 72.0 179 33.0
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 1.5e-10 70.5 183 31.1
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.0e-10 70.1 221 29.9
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 7.6e-10 68.2 179 27.9
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 1.3e-09 67.4 183 28.4
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 3.2e-08 62.8 176 30.7
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 4.2e-08 62.4 161 28.6
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 1.2e-07 60.8 163 29.4
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 3.5e-07 59.3 107 34.6
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 4.6e-07 58.9 54 57.4


User provided reference genes

Program Settings