Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3590.8 1840 100.0
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3590.8 1840 100.0
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 3590.8 1840 100.0
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3398.2 1845 94.0
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 3395.5 1845 94.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3370.5 1841 93.9
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 3220.3 1845 89.3
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 3078.9 1844 85.6
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 3033.8 1844 84.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 3021.5 1844 83.8
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 2852.0 1688 86.8
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 2786.1 1850 77.8
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 2457.6 1851 68.8
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1940.2 1861 55.8
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1940.2 1858 55.5
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1931.4 1869 54.9
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1921.7 1860 55.4
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1902.9 1861 54.9
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1900.6 1866 54.0
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1887.1 1862 54.2
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1873.6 1866 54.2
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1873.2 1856 53.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1864.0 1868 53.5
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1859.0 1859 53.8
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1858.2 1858 53.8
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1841.6 1858 53.1
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1840.5 1863 53.3
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1827.4 1942 52.0
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1825.1 1860 52.7
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1790.8 1858 50.9
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1775.4 1864 51.1
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1763.8 1709 55.1
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1760.7 1859 51.7
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1750.7 1867 51.6
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1747.6 1859 51.5
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1747.3 1855 49.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1746.9 1863 50.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1741.9 1862 49.9
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1733.8 1855 49.7
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1729.9 2005 48.8
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1727.2 1860 50.9
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1726.1 1861 50.7
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1724.5 2046 48.2
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1715.7 1872 49.4
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1709.5 1856 49.0
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1704.5 1859 50.0
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1697.2 1865 49.8
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1694.9 1856 49.7
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1693.7 1989 48.3
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1682.9 1860 49.1
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1677.9 1968 48.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1676.8 1869 49.2
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1671.0 1890 47.9
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1665.6 1863 49.1
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1656.0 1871 49.3
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1656.0 1863 48.7
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1635.9 1862 47.8
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1622.4 1697 52.2
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1612.8 1874 47.8
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1612.0 1865 48.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1611.3 1876 47.5
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1596.6 1873 47.4
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1593.6 1853 47.4
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1580.5 1725 48.9
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1563.1 1876 46.4
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1549.6 1868 46.7
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1527.3 1858 47.4
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 0.0e+00 1522.7 933 84.5
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1520.4 1519 53.6
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1491.5 1860 47.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1465.7 1509 52.0
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1458.0 1652 48.6
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1452.2 1968 43.1
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1439.9 1891 43.8
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1437.9 1919 43.1
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1427.5 1857 44.0
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1422.5 1449 52.1
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1408.7 1861 43.3
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1347.4 1895 42.8
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1304.7 1881 41.6
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1264.6 1363 49.2
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1218.4 2066 37.4
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1192.6 1898 39.3
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1189.5 1355 47.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1160.2 1224 49.7
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1148.3 1367 47.3
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1139.0 1303 48.8
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1122.5 1850 37.5
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1085.1 1179 51.0
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1082.0 1867 37.5
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 4.4e-291 1005.7 970 55.8
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.1e-232 810.8 1022 44.5
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 3.5e-227 793.5 839 51.1
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.8e-220 771.2 724 57.5
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.3e-215 754.2 1936 30.3
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.3e-213 748.4 641 59.1
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 3.1e-199 700.7 936 45.0
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.4e-175 621.3 845 43.4
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.3e-172 609.4 640 50.6
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 6.6e-170 603.2 1831 28.0
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 9.9e-166 589.3 1145 34.8
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.3e-161 574.3 614 48.7
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.8e-152 544.7 824 40.2
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.8e-152 543.9 589 50.9
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 6.9e-151 540.0 529 55.0
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.7e-149 535.4 784 40.9
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.8e-143 515.4 674 41.7
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.4e-137 493.4 523 48.6
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 7.0e-119 433.7 418 53.6
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.0e-106 391.3 634 38.0
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 8.3e-104 383.6 456 48.2
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.4e-103 382.1 371 53.1
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 3.1e-103 381.7 428 47.9
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-101 376.3 341 57.2
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 9.5e-100 370.2 349 56.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 2.2e-96 359.0 433 48.7
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.1e-91 340.9 438 40.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 2.0e-89 335.9 432 45.4
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.7e-80 306.2 401 46.6
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.2e-80 305.8 352 45.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.6e-78 299.7 337 48.4
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.0e-73 282.7 615 31.5
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.9e-72 278.1 442 37.3
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 7.6e-65 254.2 215 60.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.7e-64 253.1 546 33.2
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 4.2e-63 248.4 267 47.6
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.6e-62 246.5 183 69.9
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 6.2e-59 234.6 194 61.9
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 3.1e-58 232.3 335 39.7
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 3.8e-56 225.3 252 45.2
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.9e-55 223.0 255 46.7
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 7.1e-55 221.1 226 53.1
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 1.1e-47 197.2 949 24.6
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.1e-44 187.2 279 40.9
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.3e-42 178.3 201 47.3
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.5e-39 169.5 236 44.5
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 4.2e-39 168.7 874 25.6
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.5e-39 168.3 229 41.9
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.5e-38 165.6 266 40.2
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.3e-37 163.7 132 56.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.3e-37 162.9 250 41.6
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 2.5e-36 159.5 142 54.9
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-35 156.4 149 52.3
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-34 154.1 151 55.0
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 3.4e-33 149.1 180 45.6
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 1.7e-32 146.7 137 57.7
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.6e-30 140.2 131 55.7
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.1e-30 139.8 134 59.0
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-28 134.0 175 44.6
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.5e-28 133.7 174 43.1
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 5.7e-28 131.7 154 45.5
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.7e-27 129.0 226 38.1
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 5.3e-26 125.2 137 51.1
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 1.3e-24 120.6 108 66.7
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.9e-24 119.4 122 45.1
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 5.0e-24 118.6 63 90.5
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 5.0e-24 118.6 106 67.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.4e-23 117.1 165 45.5
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.2e-23 114.8 146 42.5
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 6.1e-22 111.7 90 58.9
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 6.3e-19 101.7 74 60.8
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.4e-17 95.9 104 46.2
BolC5t31758H Brassica oleracea HOM05D015522 ORTHO05D031943 5.9e-17 95.1 93 64.5
C09p45130 Brassica napus HOM05D015522 ORTHO05D031943 3.8e-16 92.4 117 52.1
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.4e-15 90.5 102 51.0
BcaC04g20309 Brassica carinata HOM05D015522 ORTHO05D031943 3.2e-15 89.4 93 61.3
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.6e-14 87.0 93 44.1
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 6.3e-11 75.1 119 34.5
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.8e-10 73.6 52 65.4
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 2.4e-10 73.2 127 37.0
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.1e-10 72.8 135 36.3
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 5.3e-10 72.0 82 48.8
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 5.9e-09 68.6 109 37.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-08 67.4 50 58.0
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-08 67.4 50 58.0
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 9.4e-07 61.2 53 66.0


User provided reference genes

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